[Bioc-devel] "Duplicate commits" after when pushing change right after doing a clean `git clone git at git.bioconductor.org:packages/chimeraviz`

[Turaga, Nitesh]

Hi Stian,

I’ve enabled you to push to your repository on Bioconductor. 

Your duplicate commit history weaves in and out because of merges along the way from your GitHub repository. At this point, there is very little I can do to help unless I spend a lot of time on your package, manually fixing the history. 

The duplicate commits should not effect your package development, and you should continue with it. It does not effect the build process as well. 

If you feel like this is something you can fix from your end, by using “git reset” and “git cherry-pick” you should feel free to fix. Let me know when you are successful, and I can help you push the updated repo.

For the future, duplicate commits are caused by “merge” commands. You might want to search for those if you want to know which commits are causing these duplicates.

Best,

Nitesh 


> On Jan 13, 2018, at 8:36 PM, Turaga, Nitesh <Nitesh.Turaga at RoswellPark.org> wrote:
> 
> Hi Stian,
> 
> I’m looking into it. Your commit history seems to have a discontinuous history of duplicates + non-duplicates caused by merge from different sources. I’m yet to figure out how to solve this situation.
> 
> I will get back to you within a couple of days. 
> 
> Best,
> 
> Nitesh 
> 
> 
>> On Jan 13, 2018, at 12:35 PM, Stian Lågstad <stianlagstad at gmail.com> wrote:
>> 
>> Hi,
>> 
>> Could someone help me get past the duplicate commits error? I'm not sure
>> what to do.
>> 
>> These are the steps I've taken:
>> 
>> 1. Clone the repository. `git clone git at git.bioconductor.org:packa
>> ges/chimeraviz`
>> 2. Make a small change in master + attempt to push it, and got this:
>> ```
>> ➜  chimeraviz-bioconductor git:(master) git push
>> 
>> Counting objects: 4, done.
>> Delta compression using up to 8 threads.
>> Compressing objects: 100% (4/4), done.
>> Writing objects: 100% (4/4), 422 bytes | 0 bytes/s, done.
>> 
>> Total 4 (delta 3), reused 0 (delta 0)
>> remote: Error: duplicate commits.
>> remote:
>> remote: There are duplicate commits in your commit history, These cannot be
>> remote: pushed to the Bioconductor git server. Please make sure that this is
>> remote: resolved.
>> remote:
>> remote: Take a look at the documentation to fix this,
>> remote: https://bioconductor.org/developers/how-to/git/sync-
>> existing-repositories/,
>> remote: particularly, point #8 (force Bioconductor master to Github master).
>> remote:
>> remote: For more information, or help resolving this issue, contact
>> remote: <bioc-devel at r-project.org>. Provide the error, the package name and
>> remote: any other details we might need.
>> remote:
>> remote: Use
>> remote:
>> remote:     git show 248742bd41a1b1d862d29e612baa067c50c55e5b
>> remote:     git show 81ee14920be186caf4f2949e7dacfad68db64ed2
>> remote:
>> remote: to see body of commits.
>> remote:
>> To git at git.bioconductor.org:packages/chimeraviz
>> 
>> ! [remote rejected] master -> master (pre-receive hook declined)
>> ```
>> 
>> I do see what looks like duplicate commits in the git log. For
>> example ba964db26ac49e86a5374e0dc3040769ae799113
>> and 8a49e3cdd1ce5257879d752aeead83813c6a4044, which are both from Sat Apr 8
>> 17:45:42 2017. But I've been successful in making changes after april last
>> year.
>> 
>> -- 
>> Stian Lågstad
>> +47 41 80 80 25
>> 
>> 	[[alternative HTML version deleted]]
>> 
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 
> 
> 
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