[Bioc-devel] giggle and bioc

Michael Lawrence lawrence.michael at gene.com
Tue Feb 27 19:17:26 CET 2018

25x faster for what it does I guess, which appears to be counting overlaps
to an indexed database of BED files. It's nice to see an indexing scheme
that unlike tabix is actually useful for something other than finding an
offset to a compressed block.

On Tue, Feb 27, 2018 at 10:03 AM, Vincent Carey <stvjc at channing.harvard.edu>

> I just noticed the nature methods paper on giggle, which is "25x faster
> than bedtools".  Has anyone tried to deploy or interface?
> https://github.com/ryanlayer/giggle
> has a link to biorxiv, paper in current nature methods
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