[Bioc-devel] Updates not affected

[Shepherd, Lori]

The website pages and build report are generated once a day.  Once commits are made to the git.bioconductor.org repo it can take up to 24 hours to reflect on the website.


Posting to the mailing list allows other on Bioconductor to chime in when appropriate.


Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Oghabian, Ali <ali.oghabian at helsinki.fi>
Sent: Thursday, February 8, 2018 1:31:59 PM
To: Turaga, Nitesh; bioc-devel
Subject: Re: [Bioc-devel] Updates not affected

Hi again!

Ok, from now on I'll send to the email list.


git remote -v
origin  https://github.com/gacatag/IntEREst.git (fetch)
origin  https://github.com/gacatag/IntEREst.git (push)
upstream        git at git.bioconductor.org:packages/IntEREst (fetch)
upstream        git at git.bioconductor.org:packages/IntEREst (push)


I made extensive changes to both devel and release.

As an example I increased the z in the (x.y.z) version:


The release version should be at 1.2.2 (not 1.2.0 !) (https://bioconductor.org/packages/release/bioc/html/IntEREst.html)

The devel version should be at 1.3.2 (not 1.3.0 !)

(https://www.bioconductor.org/packages/3.7/bioc/html/IntEREst.html<https://www.bioconductor.org/packages/3.7/bioc/html/IntEREst.html>)


Cheers,


Ali


--

Ali Oghabian
Bioinformatics,

RNA-splicing laboratory (Room 4024B),

Institute of Biotechnology,
P.O.Box 56 (Viikinkaari 5),
00014 University of Helsinki
Finland.

Email: ali.oghabian at helsinki.fi<https://webmail.helsinki.fi/horde/imp/dynamic.php?page=mailbox#>
Phone: +358 50 4484569

________________________________
From: Turaga, Nitesh <Nitesh.Turaga at RoswellPark.org>
Sent: 08 February 2018 20:11:38
To: Oghabian, Ali; bioc-devel
Subject: Re: Updates not affected

Hi Ali,

Please send all these queries to the bioc-devel mailing list. There are other people on the team/developer community who can help you with these questions in the event there is no response from us.

I need more information to check the your package,

        git remote -v (so that I can see that your git repo is set up correctly)

What commits are the ones you are expecting to see in the bioconductor git repo?

We have started an RSS feed which is updated every 20 mins, https://stat.ethz.ch/pipermail/bioc-devel/2018-January/012577.html. Please follow that if you want to see if your changes are in effect.

Best,

Nitesh


> On Feb 8, 2018, at 12:58 PM, Oghabian, Ali <ali.oghabian at helsinki.fi> wrote:
>
> Dear Nitesh Hello.
>
> Few hours ago I pushed several commits to the develop and release version of our package IntEREst. It has not yet been affected though and the updates are not shown in Bioconductor website. Could you kindly check the situation of the updates?
>
> To update release version I ran:
> git push origin RELEASE_3_6
> and
> git push upstream RELEASE_3_6
>
> To update develop version I ran:
> git push origin
> and
> git push upstream
>
> The changes have already been affected in github.
>
> cheers,
>
> Ali
>
> --
>
> Ali Oghabian
> Bioinformatics,
>
> RNA-splicing laboratory (Room 4024B),
> Institute of Biotechnology,
> P.O.Box 56 (Viikinkaari 5),
> 00014 University of Helsinki
> Finland.
>
> Email: ali.oghabian at helsinki.fi
> Phone: +358 50 4484569



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