[Bioc-devel] Need some help to submit a R package.

[Shepherd, Lori]

We like to keep track of the changes and have the reviews in one place.   If possible it would be better to replace the contents of existing git repository and do a version bump.


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Pijush Das <topijush at gmail.com>
Sent: Tuesday, April 24, 2018 7:43:04 AM
To: Morgan, Martin
Cc: bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Need some help to submit a R package.

Dear Sir,

I have solved most of the issues raised by the reviewers.
There were significant amount of changes in the original code.
So should we submit our package (sigFeature) as a new submission
or replace the contents of existing git repository with version increment.


regards
Pijush


On Mon, Apr 16, 2018 at 5:01 PM, Martin Morgan <
martin.morgan at roswellpark.org> wrote:

> If you are still having problems understanding warnings, it is probably
> better to use the github issue -- it may take some time to get an answer,
> because the reviewers have many responsibilities.
>
> It looks like your 'webhook' is not correct, and that you are not changing
> the version of your package (from 0.99.0 to 0.99.1, 0.99.2, ...) when you
> wish to generate another build report. @grimbough indicated in the github
> issue how to address these problems.
>
> Martin
>
>
> On 04/16/2018 03:58 AM, Pijush Das wrote:
>
>> Dear  Ruqian,
>>
>>
>> Yes sir, I have opened the build report which is a link to an HTML page
>> with details.
>> But I unable to understand why the WARNING massages are showing.
>>
>> Three days before the other reviewers had made some comments and asked me
>> to address
>> those issues and also told me to solve the NOTEs produced by BioCheck.
>>
>> Presently I am working on the sigFeature package to address those issues.
>> I shall communicate soon after solving those issues.
>>
>>
>> Thank you
>>
>>
>> Regards
>> Pijush
>>
>>
>>
>> On Mon, Apr 16, 2018 at 4:06 AM, Ruqian Lyu <
>> ruqianl at student.unimelb.edu.au>
>> wrote:
>>
>> Hi Pijush,
>>>
>>> Did you open the build report which is a link to an HTML page with
>>> details
>>> of the warning?
>>>
>>>
>>> Regards,
>>> Ruqian
>>>
>>>
>>>
>>> On Fri, Apr 13, 2018 at 4:54 PM, Pijush Das <topijush at gmail.com> wrote:
>>>
>>> Dear Sir,
>>>>
>>>>
>>>> I have submitted an R package named "sigFeature" in Github and also
>>>> Bioconductor 9 days before.
>>>> The reviewers only said that there is some WARNING problem in the
>>>> package
>>>> in different platform.
>>>>
>>>> But after that they are not communicating any thing regarding the
>>>> package.
>>>> I have checked the package
>>>> windows and Ubuntu it is working fine.
>>>>
>>>> I unable to understand what actually the problem is ?
>>>> And the reviewers are not communicating about the problem. Though I am
>>>> getting lots of email from bioc-devel dealing with others package
>>>> problem .
>>>>
>>>> Please suggest me what should I do now ?
>>>>
>>>>
>>>>
>>>>
>>>> Thank you
>>>>
>>>>
>>>>
>>>> Regards
>>>> Pijush
>>>>
>>>>
>>>>
>>>>
>>>> On Mon, Apr 2, 2018 at 4:26 PM, Turaga, Nitesh <
>>>> Nitesh.Turaga at roswellpark.org> wrote:
>>>>
>>>> Hi,
>>>>>
>>>>> Please read through this documentation.
>>>>>
>>>>> http://bioconductor.org/developers/package-submission/
>>>>>
>>>>>
>>>>> Nitesh
>>>>>
>>>>> On Apr 2, 2018, at 2:00 AM, Pijush Das <topijush at gmail.com> wrote:
>>>>>>
>>>>>> Dear Sir,
>>>>>>
>>>>>>
>>>>>>
>>>>>> I have developed an R package. I want to submit this package in
>>>>>> Bioconductor.
>>>>>> Please help me to submit the R package.
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> regards
>>>>>> Pijush Das
>>>>>>
>>>>>>        [[alternative HTML version deleted]]
>>>>>>
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