[Bioc-devel] git push confusion

[Karl Stamm]

How do I "push to both"? I dont understand the numerous git terminology. On
Friday I tried to push the bugfix but the build server still errors.

git log

commit 17c35588bcb6d87a9520cfad6d7d52fa209c517f (HEAD -> master,
upstream/master, origin/master, origin/HEAD)

So I guess the build servers are not "upstream/master" ??

I have this setup as given in the bioconductor documentation

git remote -v

origin git at github.com:kstammits/rgsepd.git (fetch)

origin git at github.com:kstammits/rgsepd.git (push)

upstream git at git.bioconductor.org:packages/rgsepd.git (fetch)

upstream git at git.bioconductor.org:packages/rgsepd.git (push)


And when I do various push commands they say "everything up to date"
But I want to make sure the bioc servers get the update before the 3.7
lockdown. Is there any way to see what the are holding ?





On Mon, Apr 23, 2018 at 10:26 AM, Turaga, Nitesh <
Nitesh.Turaga at roswellpark.org> wrote:

> Hi Karl,
>
> Bioconductor doesn’t automatically grab changes from your Github. A large
> body of the work is maintained only on our Bioconductor git server. The
> maintainer has to push to both Github and the Bioconductor server if the
> changes have to propagate.
>
> RELEASE_3_6 is now frozen forever. We announced this on April 11th. You
> cannot push to this anymore. You can still make your changes on your master
> branch.
>
> https://stat.ethz.ch/pipermail/bioc-devel/2018-April/013212.html
>
> Best,
>
> Nitesh
>
>
>
>
> > On Apr 23, 2018, at 11:21 AM, Karl Stamm <karl.stamm at gmail.com> wrote:
> >
> > I got a message this morning that malbec2 has build errors on my package.
> > It's a bug I fixed a few days ago, but it looks like I didn't push
> changes
> > to the right branches or something.  How do I get the bioc systems to
> take
> > from the github updates?
> > The help documents on the bioconductor website say to push to RELEASE_3_6
> > but that doesn't seem to work. And the build server is running the
> previous
> > code version, but calling it 3.7.
> > I'm not sure they've gotten my changes, how can i see which versions the
> > build servers have? Seems they do not automatically grab from github
> since
> > the bug was fixed a few days ago there.
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
>
>
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