[Bioc-devel] Windows <Problems with Rd links to other packages on Tokay2>

Rainer Johannes Johannes.Rainer at eurac.edu
Mon Apr 16 09:06:02 CEST 2018

Dear all,

we're experiencing WARNINGS in xcms on Tokay2 that are all related to links in Rd files to functions and methods in other packages.
we have \code{\link[MSnbase]{pickPeaks}} in XCMSnExp-inherited-methods.Rd that links to the method in MSnbase, that works nicely on Linux and macOS build machines, but on tokay2 we get:

  Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmpw7qeJw/R.INSTALL1e704df56ca9/xcms/man/XCMSnExp-inherited-methods.Rd:59: file link 'pickPeaks' in package 'MSnbase' does not exist and so has been treated as a topic

is there any other solution to removing all links to external packages?

thanks, jo

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