[Bioc-devel] WARNING regarding imporing SummarizedExperiment

[Martin Morgan]

The solution is, in the NAMESPACE, to import only those functions used

   importFrom(SummarizedExperiment, "start", "end")
   importFrom(stats, "mean")

or to import everything but

    importFrom(stats, except = c(start, end))

or to explicitly resolve symbols in the code and not mention them in the 
NAMESPACE file.

     SummarizedExperiment::start(...)

Each of these styles is supported by roxygen2.

Martin


On 04/14/2018 08:37 PM, Ruqian Lyu wrote:
> Hi guys,
> 
> I have identified the problem.
> It's the packages I imported have same function name, so the previous
> functions get overwritten.
> 
> 
> Thanks
> 
> 
> Ruqian
> 
> On Sun, Apr 15, 2018 at 10:18 AM, Ruqian Lyu <ruqianl at student.unimelb.edu.au
>> wrote:
> 
>> Hi guys,
>>
>> I'm wondering if any of you have met this warning message :
>>
>> Warning: replacing previous import 'SummarizedExperiment::start' by 'stats::start' when loading 'singscore'
>> Warning: replacing previous import 'SummarizedExperiment::end' by 'stats::end' when loading 'singscore'
>>
>> I have import SummarizedExperiment in my DESCRIPTION and NAMESPACE.
>> The package passed R CMD Check and BiocCheck without warnings. But the
>> build report returned the warnings above.
>>
>> Link to the report:
>>
>> http://bioconductor.org/spb_reports/singscore_buildreport_
>> 20180414041637.html
>>
>>
>> I'm not sure why this is happening.
>> Any help will be appreciated.
>>
>> Thanks!
>>
>> Regards,
>> Ruqian
>>
>>
> 
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> 
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