[Bioc-devel] TIMEOUT on package MEAL

Fri Apr 13 19:39:39 CEST 2018

It is by fluke that the windows did not time out... The builders timeout occur at 2400 sec and you are right up against the edge at 2145.4 seconds on windows.

The build reports include an EllapsedTime  indication in the summary section for each builder ...

Your package does not meet the requirement (<2400 (40min!!)  and your vignette needs to be altered to fit the time constraints of the builders.

You should easily be able to test R CMD build on your system and log the time to debug this issue. On linux there is the `time <command>`  option.

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Carlos Ruiz <carlos.ruiz at isglobal.org>
Sent: Friday, April 13, 2018 11:26:03 AM
To: Turaga, Nitesh; Bioc-devel
Subject: Re: [Bioc-devel] TIMEOUT on package MEAL

Hi BiocDevel,

Could you help me with this issue? The report is not very informative. I
suspect that the vignettes are taking too long but I have two vignettes
and I don't know which one is more problematic. I don't understand
either why I have a timeout in OS and Linux but not in Windows.

When I had to deal with warnings or errors, I was able to reproduce them
in my computer and solve them. Is there any way to reproduce the timeouts?

Thank you,

Carlos Ruiz

El 12/04/2018 a las 18:22, Turaga, Nitesh escribi�:
> Dear maintainer,
>
> I'd like to bring to your attention that the  your package is getting a TIMEOUT 'R CMD build' on platforms in the devel version of Bioconductor (i.e. BioC 3.7):
>
> http://bioconductor.org/checkResults/devel/bioc-LATEST/MEAL/malbec2-install.html
>
> Would you mind taking a look at this? Don't hesitate to ask on the bioc-devel mailing list if you have any question or need help.
>
> The package is failing on devel which is very problematic. If it is not fixed in devel in a timely manner we would also consider this package for potential deprecation in the next cycle.  The deadline for passing R CMD build and check in devel is April 25.
>
> Thanks for your contribution to Bioconductor.
>
> Pleae be advised that Bioconductor has switched from svn to Git. Some helpful
> links can be found here:
> https://bioconductor.org/developers/how-to/git/
>
> Best,
>
> Nitesh Turaga
> Bioconductor Core Team
>
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