[Bioc-devel] Update of miRBaseVersions.db annotation package

Stefan Haunsberger stefan.haunsberger at gmail.com
Tue Apr 10 13:16:29 CEST 2018


Thanks very much, I appreciate!

On Mon, Apr 9, 2018 at 7:45 PM Van Twisk, Daniel <
Daniel.VanTwisk at roswellpark.org> wrote:

> The package looks okay now.  I've moved the package onto our devel builder
> and it should propagate within a day or two.
> ------------------------------
> *From:* Stefan Haunsberger <stefan.haunsberger at gmail.com>
> *Sent:* Saturday, April 7, 2018 9:36:02 AM
> *To:* Van Twisk, Daniel
> *Cc:* bioc-devel at r-project.org
> *Subject:* Re: [Bioc-devel] Update of miRBaseVersions.db annotation
> package
>
> Hi,
>
> thanks for your fast reply. I've fixed the issues and get no error
> messages when running BiocCheck.
> This is the updated version:
> https://drive.google.com/open?id=1rJcs2W5fcfc0Cq74QHfNfk0mu2xJ5JJ9
>
> Thanks and kind regards,
>
> Stefan
>
> On Fri, Apr 6, 2018 at 7:58 PM Van Twisk, Daniel <
> Daniel.VanTwisk at roswellpark.org> wrote:
>
> I'd be happy to update your annotation package.  The package, however,
> appears to have multiple warnings and errors occurring on check and
> BiocCheck.  There appear to be some documentation issues and a test failure
> in check.  For BiocCheck, just be sure the BiocViews you are using are from
> one category, the other warning is fine.
>
>
> Please email once these issues are addressed and I can propagate the
> changes.
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Stefan
> Haunsberger <stefan.haunsberger at gmail.com>
> *Sent:* Thursday, April 5, 2018 1:39:21 PM
> *To:* bioc-devel at r-project.org
> *Subject:* [Bioc-devel] Update of miRBaseVersions.db annotation package
>
> Hi everyone,
>
> I would like to update the miRBaseVersions.db annotation package in devel
> version.
> It now contains the most recent miRBase release version 22, from the 12th
> of March 2018, for mature miRNAs as well as precursor miRNAs.
>
> It can be downloaded from the following google drive repository:
>
> https://drive.google.com/file/d/1J7CFiJut-0ODDePa7oO1IY7L4JycLyX7/view?usp=sharing
>
> The most recently developed version is also available on GitHub:
> https://github.com/StefanHaunsberger/mirbaseversions.db
>
> Thanks,
>
> Stefan
>
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>
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