[Bioc-devel] Matrix::(cBind|rBind) to base::(cbind|rbind)

Turaga, Nitesh Nitesh.Turaga at RoswellPark.org
Mon Apr 2 20:15:33 CEST 2018

Hello Maintainers,

The following packages have been identified for changing the functions ‘Matrix::cBind’ and ‘Matrix::rBind’ to the ‘base::cbind’ and ‘base::rbind’. The functions  ‘Matrix::cBind’ and ‘Matrix::rBind’ have been deprecated by the author of the Matrix package. (https://cran.r-project.org/web/packages/Matrix/news.html). 

List of packages:  

	chromVAR, gCMAP, gespeR, HiTC, Mirsynergy, monocle, Ringo

I’ve issued a version bump along with the switch to the new functions. These commits should be merged into your Github repos if you are maintaining your packages on both Bioconductor and Github. 

The commit should look like this:


	Commit message from Nitesh Turaga <nitesh.turaga at gmail.com>, 

	Change from cBind and rBind to 'cbind' and 'rbind'.

	    - version bump
    	    - Reference to NEWS file from Matrix package indicating
    		deprecated 'cBind' and 'rBind'


Please reply to this thread if you have any further questions regarding this change. 

Best regards,

Nitesh Turaga
Bioconductor Core Team

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