[Bioc-devel] VIGNETTES IN DEVEL

[Rodriguez Martinez, Andrea]

Thanks very much.


Best wishes,


Andrea

________________________________
From: Shepherd, Lori <Lori.Shepherd at RoswellPark.org>
Sent: 19 September 2017 12:17:12
To: Rodriguez Martinez, Andrea; bioc-devel at r-project.org
Subject: Re: VIGNETTES IN DEVEL


There were changes to BiocStyle in devel which might account for some of the different


The changes can be found in the BiocStyle NEWS file

https://github.com/Bioconductor/BiocStyle/blob/master/NEWS


There also was some previous discussion in this thread:

https://stat.ethz.ch/pipermail/bioc-devel/2017-September/011623.html



Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Rodriguez Martinez, Andrea <andrea.rodriguez-martinez13 at imperial.ac.uk>
Sent: Tuesday, September 19, 2017 4:24:43 AM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] VIGNETTES IN DEVEL

Hello,


I think there is something weird with the html vignettes in the devel branch. For some reason, they've less width and the some images appear misaligned, compared to the release version.


See below for example:

https://bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html
SummarizedExperiment for Coordinating Experimental Assays ...<https://bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html>
bioconductor.org
SummarizedExperiment for Coordinating Experimental Assays, Samples, and Regions of Interest Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès




https://bioconductor.org/packages/devel/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html
SummarizedExperiment for Coordinating Experimental Assays ...<https://bioconductor.org/packages/devel/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html>
bioconductor.org
SummarizedExperiment for Coordinating Experimental Assays, Samples, and Regions of Interest Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès





<https://bioconductor.org/packages/devel/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html>https://bioconductor.org/packages/release/bioc/vignettes/MetaboSignal/inst/doc/MetaboSignal.html
SummarizedExperiment for Coordinating Experimental Assays ...<https://bioconductor.org/packages/devel/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html>
bioconductor.org
SummarizedExperiment for Coordinating Experimental Assays, Samples, and Regions of Interest Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès




https://bioconductor.org/packages/devel/bioc/vignettes/MetaboSignal/inst/doc/MetaboSignal.html
Contents<https://bioconductor.org/packages/devel/bioc/vignettes/MetaboSignal/inst/doc/MetaboSignal.html>
bioconductor.org
1 Abstract “MetaboSignal” is an R package designed to overlay metabolic and signaling pathways reported in the Kyoto Encyclopaedia of Genes and Genomes (KEGG).





Best,


Andrea






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