[Bioc-devel] Fwd: Getting w+r access for my package (IntEREst); svn/git transfer problem (Problem remains unsloved)

[Turaga, Nitesh]

You are welcome.

Begin forwarded message:

From: "Oghabian, Ali" <ali.oghabian at helsinki.fi<mailto:ali.oghabian at helsinki.fi>>
Subject: Re: Getting w+r access for my package (IntEREst); svn/git transfer problem (Problem remains unsloved)
Date: September 14, 2017 at 12:19:37 PM EDT
To: "Turaga, Nitesh" <Nitesh.Turaga at roswellpark.org<mailto:Nitesh.Turaga at roswellpark.org>>

Hi again!

It worked just now 😊

Thank you !

--

Ali Oghabian
Bioinformatics,

RNA-splicing laboratory (Room 4024B),
Institute of Biotechnology,
P.O.Box 56 (Viikinkaari 5),
00014 University of Helsinki
Finland.

Email: ali.oghabian at helsinki.fi<https://webmail.helsinki.fi/horde/imp/dynamic.php?page=mailbox#>
Phone: +358 50 4484569
________________________________
From: Turaga, Nitesh <Nitesh.Turaga at roswellpark.org<mailto:Nitesh.Turaga at roswellpark.org>>
Sent: 14 September 2017 19:17:47
To: Oghabian, Ali
Subject: Re: Getting w+r access for my package (IntEREst); svn/git transfer problem (Problem remains unsloved)

The script runs at noon EST, takes a few mins. But I see that your key is in the system.

Please try again.

Nitesh

> On Sep 14, 2017, at 12:13 PM, Oghabian, Ali <ali.oghabian at helsinki.fi<mailto:ali.oghabian at helsinki.fi>> wrote:
>
> Hi again dear Nitesh!
> Thanks for your reply. I actually resubmitted with the correct svn ID (a.oghabian) but the problem still remains unsloved.
>
> when I run 'ssh -T' command I get permission denied:
>
> ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org> | grep IntEREst
> Permission denied (publickey).
>
> I also can not push the latest changes to upstream:
>
> git push upstream master
> Permission denied (publickey).
> fatal: Could not read from remote repository.
>
> Please make sure you have the correct access rights
> and the repository exists.
>
> Since it is mentioned on the Goggle form that it takes a day for the submit to happen, I was wondering if my latest submission of my public key to the google form (which took place about 20 hours ago) is affected and successful. Note that my public ssh key is available in my github account (i.e. gacatag).
>
> Cheers,
>
> Ali
> --
>
> Ali Oghabian
> Bioinformatics,
>
> RNA-splicing laboratory (Room 4024B),
> Institute of Biotechnology,
> P.O.Box 56 (Viikinkaari 5),
> 00014 University of Helsinki
> Finland.
>
> Email: ali.oghabian at helsinki.fi<mailto:ali.oghabian at helsinki.fi>
> Phone: +358 50 4484569
> From: Nitesh <nitesh.turaga at gmail.com<mailto:nitesh.turaga at gmail.com>>
> Sent: 13 September 2017 22:41:51
> To: Oghabian, Ali
> Cc: bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>
> Subject: Re: Getting w+r access for my package (IntEREst); svn/git transfer problem.
>
> You have submitted an incorrect SVN ID when you filled in the google form. Please check your submission.
>
> Your svn id is a.oghabian, you submitted oghabian.
>
> Nitesh (Please reply to: nitesh.turaga at roswellpark.org<mailto:nitesh.turaga at roswellpark.org>)
>
>
>
> On Wed, 13 Sep 2017 at 15:37 Oghabian, Ali <ali.oghabian at helsinki.fi<mailto:ali.oghabian at helsinki.fi>> wrote:
> Dear Nitesh, Hi!
> Sorry to email you, but I have both read your slides (https://www.bioconductor.org/help/course-materials/2017/BioC2017/DDay/Workshop/GitWithTheProgram.pdf) togetehr with the document page and FAQ page regarding svn to git conversion for updating the Bioconductor packages but I could not managed to make it work!
>
> I have been struggling with updating and pushing the changes to my package (i.e. IntEREst) ingit at git.bioconductor.org<mailto:ingit at git.bioconductor.org>. I used to use SVN for this purpose and now I am trying to change to git while at the same time updating the package on github (my github id is 'gacatag').
>
> I did submit my public SSH key to the google doc several times during the passed 2 days but in the end I never managed to get writing rights for my package. Yesterday, I actually obtained "Read" rights but after building a new key and adding it to the google doc, I lost the "Read" rights too.
>
> I would like to use the same public key that exists in my github profile (i.e. gacatag). Just now,  I added the public key once more but when I run 'ssh -T' comand this happens:
>
> ssh -T git at git.bioconductor.org<mailto:git at git.bioconductor.org> | grep IntEREst
> Permission denied (publickey).
>
> Git remote also returns:
>
> git remote -v
> origin  git at github.com<mailto:git at github.com>:gacatag/IntEREst.git (fetch)
> origin  git at github.com<mailto:git at github.com>:gacatag/IntEREst.git (push)
> upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/IntEREst.git (fetch)
> upstream        git at git.bioconductor.org<mailto:git at git.bioconductor.org>:packages/IntEREst.git (push)
>
> Also the access settings of the ssh key files are as follows:
>
> ls -l ~/.ssh/id_rsa*
> -r--------. 1 oghabian oghabian 3243 13.9. 15:09 /home/oghabian/.ssh/id_rsa
> -rwx------. 1 oghabian oghabian  750 12.9. 16:01 /home/oghabian/.ssh/id_rsa.pub
>
>  The changes were successfully pushed to my package on my github account (origin) but for the 'upstream' I get the following message.
>
> git push upstream master
> Permission denied (publickey).
> fatal: Could not read from remote repository.
>
> Please make sure you have the correct access rights
> and the repository exists.
>
> I would appreciate if you could assist me on how to get read and write rights for my package in Bioconductor so that I could push the changes.
> Cheers,
>
> Ali
> --
>
> Ali Oghabian
> Bioinformatics,
>
> RNA-splicing laboratory (Room 4024B),
> Institute of Biotechnology,
> P.O.Box 56 (Viikinkaari 5),
> 00014 University of Helsinki
> Finland.
>
> Email: ali.oghabian at helsinki.fi<mailto:ali.oghabian at helsinki.fi>
> Phone: +358 50 4484569
> --
> Nitesh Turaga



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