[Bioc-devel] Creating an org.Hs.uniprot.db package
kmezhoud at gmail.com
Wed Sep 13 12:35:21 CEST 2017
I general LCMSMS generate mass/charge data of Amino Acid or peptides.
The goal in to identify which protein belong the peptides.
The Software used with LCMSMS can match the peptides to Uniprot database ,
and ranks putative proteins by scores.
Could the tell us what is the interest of org.Hs.uniprot.db versus default
On Wed, Sep 13, 2017 at 11:19 AM, Vincent Carey <stvjc at channing.harvard.edu>
> can you say a little more about what resource will be tapped and what it
> will look like? you can
> already use uniprot identifiers as keys into org.Hs.eg.db
> On Tue, Sep 12, 2017 at 9:05 AM, Aditya Bhagwat <
> adb2018 at qatar-med.cornell.edu> wrote:
> > Hey guys,
> > I love the org.Hs.eg.db package (and similar others for other organisms).
> > I work a lot with LCMSMS proteomics data, and I have always missed a
> > similar org.Hs.uniprot.db package, so I am thinking of creating that (and
> > then sharing it on BioC, to benefit fellow proteomics R users).
> > Would you agree that this is of general interest? (Or does this in some
> > form already exist and have I overlooked it?)
> > Thanks for your feedback!
> > Cheers,
> > Aditya
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