[Bioc-devel] Creating an org.Hs.uniprot.db package

[Karim Mezhoud]

Hi,
I general LCMSMS generate mass/charge data of Amino Acid or peptides.
The goal in to identify which  protein belong the peptides.
The Software used with LCMSMS can match the peptides to Uniprot database ,
and ranks putative proteins by scores.
Could the tell us what is the interest of org.Hs.uniprot.db versus default
UniprotKB?
Thanks,
Karim


On Wed, Sep 13, 2017 at 11:19 AM, Vincent Carey <stvjc at channing.harvard.edu>
wrote:

> can you say a little more about what resource will be tapped and what it
> will look like?  you can
> already use uniprot identifiers as keys into org.Hs.eg.db
>
> On Tue, Sep 12, 2017 at 9:05 AM, Aditya Bhagwat <
> adb2018 at qatar-med.cornell.edu> wrote:
>
> > Hey guys,
> >
> > I love the org.Hs.eg.db package (and similar others for other organisms).
> >
> > I work a lot with LCMSMS proteomics data, and I have always missed a
> > similar org.Hs.uniprot.db package, so I am thinking of creating that (and
> > then sharing it on BioC, to benefit fellow proteomics R users).
> >
> > Would you agree that this is of general interest? (Or does this in some
> > form already exist and have I overlooked it?)
> >
> > Thanks for your feedback!
> >
> > Cheers,
> >
> > Aditya
> >
> >
> >
> > Disclaimer: This email and its attachments may be confidential and are
> > intended solely for the use of the individual to whom it is addressed. If
> > you are not the intended recipient, any reading, printing, storage,
> > disclosure, copying or any other action taken in respect of this e-mail
> is
> > prohibited and may be unlawful. If you are not the intended recipient,
> > please notify the sender immediately by using the reply function and then
> > permanently delete what you have received..
> >
> >         [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
>         [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

	[[alternative HTML version deleted]]