[Bioc-devel] Package DMCHMM is not installed

Farhad Shokoohi shokoohi at icloud.com
Tue Sep 12 15:01:52 CEST 2017


Thanks but that didn’t clarify why users should install the dev version. 
Why the package is not on the page
http://bioconductor.org/packages/release/BiocViews.html#___Software
Sorry this is first time I submitted a package to bioconductor and I am not so familiar with instructions. 


> On Sep 11, 2017, at 11:31 PM, Leonardo Collado Torres <lcollado at jhu.edu> wrote:
> 
> It's only available on bioc-devel, not bioc-release. See
> http://bioconductor.org/packages/devel/bioc/html/DMCHMM.html and
> http://bioconductor.org/developers/how-to/useDevel/
> 
> On Mon, Sep 11, 2017 at 7:17 PM, Farhad Shokoohi <shokoohi at icloud.com> wrote:
>> Hello,
>> 
>> I tried to install my package on a machine and it gives the following warning which does not make sense.
>> 
>>> source("https://bioconductor.org/biocLite.R")
>> Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help
>>> biocLite("DMCHMM")
>> BioC_mirror: https://bioconductor.org
>> Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30).
>> Installing package(s) ‘DMCHMM’
>> Old packages: 'limma'
>> Update all/some/none? [a/s/n]:
>> n
>> Warning message:
>> package ‘DMCHMM’ is not available (for R version 3.4.1)
>>> 
>> 
>> 
>> ———
>> Farhad Shokoohi
>> Assistant Professor
>> Department of Mathematics & Statistics
>> Concordia University
>> S-LB 915-1, J.W. McConnell Building,
>> 1455 De Maisonneuve W.,
>> Montreal, Quebec, Canada, H3G 1M8
>> Office: (514) 848-2424 ext. 4017
>> Fax: (514) 848-2831
>> shokoohi at icloud.com
>> 
>> 
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>> 
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