[Bioc-devel] Bioconductor-mirror permanently removed August 25th

[Turaga, Nitesh]

Hi Jim

We are more worried about the confusion it creates among the users.

Users have tried to push their commits to the bioconductor-mirror instead of the bioconductor git server. Another source of confusion is, some maintainers have forked their packages from the Bioconductor-mirror, and have started developing from that point on GitHub. This creates a unique issue of duplicate commits, when they merge updates from the bioc-git server. People also send in pull requests/issues to this mirror repositories where they are unmaintained, causing a new kind of problem to both users and maintainers.

We realize the importance of a browsable source repository, and are looking into gitweb on the bioc-git server directly. Having a GitHub based mirror also prevents us from hosting data-packages on Github. The idea of a browsable source should be to view all Bioconductor packages( software / data / workflows). My vote is to remove this, only because of the amount of confusion it causes on the regular. 

I’ll let others chime in as well, and would love to hear your thoughts about Gitweb(https://git-scm.com/docs/gitweb) or other such software.


Best,

Nitesh

> On Sep 6, 2017, at 11:07 AM, Jim Hester <james.f.hester at gmail.com> wrote:
> 
> This mirror could be relatively simply supported by setting up an additional remote in the server side repositories and adding a post-receive hook to each repository that simply pushes to the GitHub mirror remote after commits are received.
> 
> https://git-scm.com/book/gr/v2/Customizing-Git-Git-Hooks
> https://help.github.com/articles/about-github-mirrors/
> 
> Having an easily browsable source repository online is a pretty valuable thing, it is a shame to lose this.
> 
> Jim
> 
> On Thu, Aug 17, 2017 at 3:53 PM, Turaga, Nitesh <Nitesh.Turaga at roswellpark.org> wrote:
> Hi Maintainers,
> 
> The https://github.com/Bioconductor-mirror is now stale after Bioconductor’s git transition. We are no longer going to support it, and will be taking it offline permanently on August 25th (next Friday).
> 
> If you have “forked” a repository from the Bioconductor-mirror, you will be fine. It will not have any consequence on your repository, the only change will be the “forked from bioconductor-mirror” tag will be removed.
> 
> 
> Best,
> 
> Nitesh
> 
> 
> 
> This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
>         [[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 



This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.