[Bioc-devel] EXTERNAL: Re: name of git repo for brgedata/BRGEdata package

Mon Oct 30 15:09:33 CET 2017

It seems you have submitted a bad id and key to the form.  

1. For GitHub ID, it needs to submit  as `carleshf`, not `github.com/carleshf`. 

2. the SSH key needs the `ssh-rsa` header in front of the key. It was submitted without it. 

Please resubmit. 

Your entries need to be,

Email : carles.hernandez at isglobal.org
SNV account: carleshf
Github: carleshf

> On Oct 24, 2017, at 9:11 AM, Carles Hernández <carles.hernandez at isglobal.org> wrote:
> 
> Dear Nitesh,
> 
> 
> I checked again if I can fetch the repo in order to push the properly changes to "brgedata" (and to "omicRexposome"). As you can see:
> 
> chernandez at workstation01 MINGW64 ~/Projects/BRGEdata (master)
> $ git fetch --all
> Fetching origin
> Fetching upstream
> Permission denied (publickey).
> fatal: Could not read from remote repository.
> 
> Please make sure you have the correct access rights
> and the repository exists.
> error: Could not fetch upstream
> 
> 
> Kind regards,
> 
> Carles Hernandez-Ferrer
> Bioinformatic Analyst / PhD Student
> ISGlobal
> Barcelona Institute for Global Health - Campus Mar
> Barcelona Biomedical Research Park (PRBB) (office 183.01 A)
> Doctor Aiguader, 88
> 08003 Barcelona, Spain
> Tel. +34 93 214 73 22
> carles.hernandez at isglobal.org
> www.isglobal.org | www.carleshf.com
> 
> We are pleased to tell you that after three years of a strategic alliance between ISGlobal and CREAL, both institutions have merged. The resulting institution, which retains the ISGlobal name, will build upon the existing areas of excellence to become a world-class player in research, education and innovation in Global Health. More info at http://ow.ly/krQd301Nj3w
> 
> On 21 October 2017 at 19:23, Hervé Pagès <hpages at fredhutch.org> wrote:
> Thanks Carles for the update.
> 
> Please do "Reply All" on further communications. Thanks!
> 
> Regards,
> H.
> 
> 
> On 10/21/2017 12:50 AM, Carles Hernández wrote:
> Dear Hervé,
> 
> 
> Yesterday I connacted Nitesh because it seems that I have some permision
> problems with my user. We keep in mind that we msut solve this as fast
> as possible.
> 
> 
> Kidnr egards,
> 
> Carles Hernandez-Ferrer
> Bioinformatic Analyst / PhD Student
> *ISGlobal*
> Barcelona Institute for Global Health - Campus Mar
> Barcelona Biomedical Research Park (PRBB) (office 183.01 A)
> Doctor Aiguader, 88
> 08003 Barcelona, Spain
> Tel. +34 93 214 73 22
> carles.hernandez at isglobal.org <mailto:carles.hernandez at isglobal.org>
> www.isglobal.org
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.isglobal.org&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=KqEXQCfBzLuIGKqv-nudfrAMBK9vvNp9cwbDMpKrBOw&e=>
> | www.carleshf.com
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.carleshf.com&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=OfujD4doFtTBBAvjVFo0Ig9y4wpvkm1Gmbm2kzt4fZk&e=>
> /
> //We are pleased to tell you that after three years of a strategic
> alliance between ISGlobal and CREAL, both institutions have merged. The
> resulting institution, which retains the ISGlobal name, will build upon
> the existing areas of excellence to become a world-class player in
> research, education and innovation in Global Health. More info at
> http://ow.ly/krQd301Nj3w
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__ow.ly_krQd301Nj3w&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=VyLQQzXOB1B-TsSyjAg7nJREJIPNSHILQW4-0-QIjWQ&e=>/
> 
> On 21 October 2017 at 09:02, Hervé Pagès <hpages at fredhutch.org
> <mailto:hpages at fredhutch.org>> wrote:
> 
>     Hi omicRexposome/BRGEdata developers,
> 
>     When the BRGEdata package was accepted, we added the brgedata git
>     repo to the Bioconductor git server:
> 
>     https://git.bioconductor.org/packages/brgedata
>     <https://urldefense.proofpoint.com/v2/url?u=https-3A__git.bioconductor.org_packages_brgedata&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=HfuDh_Ddt-7u86QmKJK_vCohdqotR7-D8ei1GSOjKK0&e=>
> 
>     Unfortunately at the time we did this, the name of the git repo didn't
>     match the name of the package (brgedata vs BRGEdata). This is causing
>     problems in our build system and is preventing the package from showing
>     up on the daily build report for data-experiment packages:
> 
>     https://bioconductor.org/checkResults/3.6/data-experiment-LATEST/
>     <https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.6_data-2Dexperiment-2DLATEST_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=GExsX_2mmkN7kjCHc9hDEcT1M3L9IuNn7bLxhD7ftnY&e=>
> 
>     This in turn is causing the omicRexposome package to fail on the daily
>     builds:
> 
>     https://bioconductor.org/checkResults/3.6/bioc-LATEST/omicRexposome/
>     <https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.6_bioc-2DLATEST_omicRexposome_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=7rHy7hhpHAMZxl3d4GjOayfExvB3W_2S9kLfSE4D2Dg&e=>
> 
>     It seems that at some point you've renamed the package to brgedata on
>     GitHub but it doesn't seem that this change was pushed to Bioconductor.
> 
>     Please keep in mind that now that your package is on the Bioconductor
>     git server, your changes need to be pushed there too. See
> 
>     https://bioconductor.org/developers/how-to/git/
>     <https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_developers_how-2Dto_git_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=XCUc9vWrZvqv1_g-0ox9Tzqf7hjadFiIKf93Jzx3InE&e=>
> 
>     for a collection of documents that cover all the aspects of maintaining
>     a Bioconductor package via git/GitHub. In particular, see the
>     "Push to GitHub and Bioconductor" document.
> 
>     Note that Marcel (cc'ed) reported this issue on GitHub a few days ago:
> 
>     https://github.com/isglobal-brge/brgedata/issues/1
>     <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_isglobal-2Dbrge_brgedata_issues_1&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=qwAooENwuXnhBA_sSR-OkAjZ_Wl0vaJL5K8VJFm88fU&e=>
> 
>     Please let us know if you have questions or concerns about this.
> 
>     Thanks for your contribution to Bioconductor.
> 
>     Regards,
>     H.
> 
>     --
>     Hervé Pagès
> 
>     Program in Computational Biology
>     Division of Public Health Sciences
>     Fred Hutchinson Cancer Research Center
>     1100 Fairview Ave. N
>     <https://urldefense.proofpoint.com/v2/url?u=https-3A__maps.google.com_-3Fq-3D1100-2BFairview-2BAve.-2BN-26entry-3Dgmail-26source-3Dg&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=D5LewGEiRujWbwC639yu6_2pOlp0miFTg1OGHbuKGp0&e=>,
>     M1-B514
>     P.O. Box 19024
>     Seattle, WA 98109-1024
> 
>     E-mail: hpages at fredhutch.org <mailto:hpages at fredhutch.org>
>     Phone: (206) 667-5791 <tel:%28206%29%20667-5791>
>     Fax: (206) 667-1319 <tel:%28206%29%20667-1319>
> 
> 
> 
> This message is intended exclusively for its addressee and may contain
> information that is CONFIDENTIAL and protected by professional
> privilege. If you are not the intended recipient you are hereby notified
> that any dissemination, copy or disclosure of this communication is
> strictly prohibited by law. If this message has been received in error,
> please immediately notify us via e-mail and delete it.
> 
> DATA PROTECTION. We inform you that your personal data, including your
> e-mail address and data included in your email correspondence, are
> included in the ISGlobal Foundation files. Your personal data will be
> used for the purpose of contacting you and sending information on the
> activities of the above foundations. You can exercise your rights of
> access, rectification, cancellation and opposition by contacting the
> following address: lopd at isglobal.org <mailto:lopd at isglobal.org>.
> ISGlobal Privacy Policy at www.isglobal.org
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.isglobal.org_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=5D8HUtR8uPOtJ9CActvbav_89F6Kkjc7UfuilLnvqkA&e=>.
> 
> -----------------------------------------------------------------------------------------------------------------------------
> 
> CONFIDENCIALIDAD. Este mensaje y sus anexos se dirigen exclusivamente a
> su destinatario y puede contener información confidencial, por lo que la
> utilización, divulgación y/o copia sin autorización está prohibida por
> la legislación vigente. Si ha recibido este mensaje por error, le
> rogamos lo comunique inmediatamente por esta misma vía y proceda a su
> destrucción.
> 
> PROTECCIÓN DE DATOS. Sus datos de carácter personal utilizados en este
> envío, incluida su dirección de e-mail, forman parte de ficheros de
> titularidad de la Fundación ISGlobal  para cualquier finalidades de
> contacto, relación institucional y/o envío de información sobre sus
> actividades. Los datos que usted nos pueda facilitar contestando este
> correo quedarán incorporados en los correspondientes ficheros,
> autorizando el uso de su dirección de e-mail para las finalidades
> citadas. Puede ejercer los derechos de acceso, rectificación,
> cancelación y oposición dirigiéndose alopd at isglobal.org
> <mailto:lopd at isglobal.org>__. Política de privacidad enwww.isglobal.org
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.isglobal.org_&d=DwMFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=UE8YU4mmMrQG59VPEhHJQf3-VLQMLyzKZv9ZsmH74IA&s=5D8HUtR8uPOtJ9CActvbav_89F6Kkjc7UfuilLnvqkA&e=>.
> 
> 
> -- 
> Hervé Pagès
> 
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
> 
> E-mail: hpages at fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
> 
> 
> This message is intended exclusively for its addressee and may contain information that is CONFIDENTIAL and protected by professional privilege. If you are not the intended recipient you are hereby notified that any dissemination, copy or disclosure of this communication is strictly prohibited by law. If this message has been received in error, please immediately notify us via e-mail and delete it.
> 
> DATA PROTECTION. We inform you that your personal data, including your e-mail address and data included in your email correspondence, are included in the ISGlobal Foundation files. Your personal data will be used for the purpose of contacting you and sending information on the activities of the above foundations. You can exercise your rights of access, rectification, cancellation and opposition by contacting the following address: lopd at isglobal.org. ISGlobal Privacy Policy at www.isglobal.org.
> 
> -----------------------------------------------------------------------------------------------------------------------------
> 
> CONFIDENCIALIDAD. Este mensaje y sus anexos se dirigen exclusivamente a su destinatario y puede contener información confidencial, por lo que la utilización, divulgación y/o copia sin autorización está prohibida por la legislación vigente. Si ha recibido este mensaje por error, le rogamos lo comunique inmediatamente por esta misma vía y proceda a su destrucción.
> 
> 
> PROTECCIÓN DE DATOS. Sus datos de carácter personal utilizados en este envío, incluida su dirección de e-mail, forman parte de ficheros de titularidad de la Fundación ISGlobal  para cualquier finalidades de contacto, relación institucional y/o envío de información sobre sus actividades. Los datos que usted nos pueda facilitar contestando este correo quedarán incorporados en los correspondientes ficheros, autorizando el uso de su dirección de e-mail para las finalidades citadas. Puede ejercer los derechos de acceso, rectificación, cancelación y oposición dirigiéndose a lopd at isglobal.org . Política de privacidad en www.isglobal.org.
> 

This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.