[Bioc-devel] OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6

Shepherd, Lori Lori.Shepherd at RoswellPark.org
Fri Oct 27 14:53:32 CEST 2017

Hello all,

The complete set of OrgDb packages have been added to AnnotationHub as well as the newly added TxDb. They will be immediatly available following the release and using the release Bioc 3.6.

The following example:

> library(AnnotationHub)

> hub = AnnotationHub()

updating metadata: retrieving 1 resource


snapshotDate(): 2017-10-27

> query(hub, "OrgDb")
AnnotationHub with 1019 records

> table(mcols(query(hub, "OrgDb"))$rdatadateadded)

2017-10-23 2017-10-27
        19       1000

> query(hub, "TxDb")
AnnotationHub with 45 records

> table(mcols(query(hub, "TxDb"))$rdatadateadded)

2016-12-22 2017-04-11 2017-04-13 2017-10-24
        29          1          5         10


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

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