[Bioc-devel] Workflow builder failing at postprocessing step

[Leonardo Collado Torres]

Hi,

I recently pushed some changes to recountWorkflow** that triggered new
"postprocessing" jobs by the workflow builder. The last few (#412 up
to 415) failed and I can see at
http://docbuilder.bioconductor.org:8080/job/postprocessing/label=master/415/console
that the error is related to the retirement of the Mac workflow build
machine:

+ true
+ MACREPO=/var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4
+ mkdir -p /var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4
+ rm -f /var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4/recountWorkflow_*.tgz
+ cp /var/lib/jenkins/repository/recountWorkflow/*.tgz
/var/lib/jenkins/repository/CRANrepo/3.6/bin/macosx/contrib/3.4
cp: cannot stat '/var/lib/jenkins/repository/recountWorkflow/*.tgz':
No such file or directory
Build step 'Execute shell' marked build as failure

Hopefully the Mac tar ball part can be ignored for now. I just wanted
to check if the recount workflow looked ok after I made some changes
suggested by Andrzej in another thread
https://stat.ethz.ch/pipermail/bioc-devel/2017-August/011444.html.


Thanks,
Leo

** Changes I made are from versions 0.99.32 to 0.99.37
https://github.com/LieberInstitute/recountWorkflow/commits/master