[Bioc-devel] Pandoc issues

[Vladimir Kiselev]

Hi,

I am not able to plot Sankey diagrams using `googleVis` in the vignette of
my package (scmap). Here is error message:
http://bioconductor.org/checkResults/devel/bioc-LATEST/scmap/malbec2-buildsrc.html

It says:
pandoc: Could not fetch
https://www.google.com/jsapi?callback=displayChartSankeyID6c664210b0e5
TlsExceptionHostPort (HandshakeFailed Error_EOF) "www.google.com" 443

I had the same problem on my local machine before but updating pandoc to
the latest version and also installing the development version of
`rmarkdown` package solved the problem.

So at the moment most of the things from `googleVis` (
https://cran.r-project.org/web/packages/googleVis/vignettes/googleVis_examples.html)
fail if built in the package vignette.

Would it be possible to address this issue?
Many thanks,
Vlad
-- 
http://genat.uk

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