[Bioc-devel] Build error on windows (devel)
Martin Morgan
martin.morgan at roswellpark.org
Sat Nov 11 03:17:13 CET 2017
On Windows and Mac, we install binary versions of CRAN packages from
CRAN, rather than building them from source; this is what users would
do. For unknown reasons, the CRAN packages for R-devel (hence
Bioc-devel, where your package is not building) are built against
R-3.4.2, and are not compatible with R-devel. The CRAN packages fail to
install, hence Bioconductor packages that depend on CRAN packages,
directly or indirectly, fail to install. There are a large number of these
http://bioconductor.org/checkResults/3.7/bioc-LATEST/tokay2-index.html
and the only resolution is for CRAN to distribute correct binaries. CRAN
has been notified of the problem.
Martin
On 11/10/2017 07:18 PM, Nicholas Clark wrote:
> I’m getting an error on the Windows (tokay2) build for the devel version of my package for some reason.
> It looks like the error is because of an error in SummarizedExperiment, which is caused by an error in it’s dependencies.
> Any idea why this would happen?
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> http://bioconductor.org/checkResults/devel/bioc-LATEST/GRmetrics/tokay2-buildsrc.html
>
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> Thanks,
> Nick Clark
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