[Bioc-devel] Build error on windows (devel)

Martin Morgan martin.morgan at roswellpark.org
Sat Nov 11 03:17:13 CET 2017


On Windows and Mac, we install binary versions of CRAN packages from 
CRAN, rather than building them from source; this is what users would 
do. For unknown reasons, the CRAN packages for R-devel (hence 
Bioc-devel, where your package is not building) are built against 
R-3.4.2, and are not compatible with R-devel. The CRAN packages fail to 
install, hence Bioconductor packages that depend on CRAN packages, 
directly or indirectly, fail to install. There are a large number of these

   http://bioconductor.org/checkResults/3.7/bioc-LATEST/tokay2-index.html

and the only resolution is for CRAN to distribute correct binaries. CRAN 
has been notified of the problem.

Martin


On 11/10/2017 07:18 PM, Nicholas Clark wrote:
> I’m getting an error on the Windows (tokay2) build for the devel version of my package for some reason.
> It looks like the error is because of an error in SummarizedExperiment, which is caused by an error in it’s dependencies.
> Any idea why this would happen?
> 
> 
> 
> http://bioconductor.org/checkResults/devel/bioc-LATEST/GRmetrics/tokay2-buildsrc.html
> 
> 
> 
> Thanks,
> Nick Clark
> 
> 
> 
> 
> 
> 	[[alternative HTML version deleted]]
> 
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