[Bioc-devel] Question about BiocGeneric::order
Jianhong.Ou at umassmed.edu
Thu May 11 22:29:25 CEST 2017
Thank you Hervé,
I got that. Good to know that BioC 3.6 require R 3.4.0.
Bioinformatician of Bioinformatics core at
Department of Molecular, Cell and Cancer Biology
UMASS Medical School
364 Plantation Street Worcester,
This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential, proprietary and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender immediately and destroy or permanently delete all copies of the original message.
On 5/11/17, 4:25 PM, "Hervé Pagès" <hpages at fredhutch.org> wrote:
I can't reproduce this but I'm using R 3.4.0.
You seem to be using Bioc devel (aka BioC 3.6) with R devel.
This is not supported. Both, BioC 3.5 (current release) and
BioC 3.6 require R 3.4.0.
On 05/11/2017 01:11 PM, Ou, Jianhong wrote:
> I got error when I try order for Rle object by following codes:
> ## Error in match.arg(method) : 'arg' must be of length 1
> R Under development (unstable) (2017-05-10 r72667)
> Platform: x86_64-apple-darwin16.5.0 (64-bit)
> Running under: macOS Sierra 10.12.4
> Matrix products: default
> BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.dylib
> LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
>  en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> attached base packages:
>  stats4 parallel stats graphics grDevices utils datasets
>  methods base
> other attached packages:
>  XVector_0.17.0 IRanges_2.11.2 S4Vectors_0.15.1
>  BiocGenerics_0.23.0
> loaded via a namespace (and not attached):
>  zlibbioc_1.23.0 compiler_3.5.0
> Is this a bug? Or I should always add method argument?
> Yours Sincerely,
> Jianhong Ou
> TEL: 508-856-5379
> LRB 608
> Bioinformatician of Bioinformatics core at
> Department of Molecular, Cell and Cancer Biology
> UMASS Medical School
> 364 Plantation Street Worcester,
> MA 01605
> Confidentiality Notice:
> This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential, proprietary and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender immediately and destroy or permanently delete all copies of the original message.
> [[alternative HTML version deleted]]
> Bioc-devel at r-project.org mailing list
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpages at fredhutch.org
Phone: (206) 667-5791
Fax: (206) 667-1319
More information about the Bioc-devel