[Bioc-devel] github mirror out of sync for ensembldb

Martin Morgan martin.morgan at roswellpark.org
Wed May 3 19:51:41 CEST 2017

On 05/03/2017 01:10 PM, Leonardo Collado Torres wrote:
> Hi,
> I don't think that any of the Bioconductor-mirror repos have been
> updated to match the current bioc-devel branch. For example, look at
> https://github.com/Bioconductor-mirror/aCGH/blob/master/DESCRIPTION#L4
> which is one of the first packages by alphabetical order. My guess is
> that they are working on the svn to git transition plan described at
> https://stat.ethz.ch/pipermail/bioc-devel/2017-March/010691.html.

That's not correct, the repositories should be (in general) up to date. 
I believe Johannes' package is current (sorry, by the time I got to it 
it had healed itself and I didn't respond to the list).

aCGH actually had a RELEASE_3_5 branch; I'll investigate why aCGH and at 
least some other packages have not been fully updated after the branch.


> Best,
> Leo
> On Thu, Apr 27, 2017 at 6:52 AM, Rainer Johannes
> <Johannes.Rainer at eurac.edu> wrote:
>> Hi,
>> the github mirror for ensembldb seems to be out of sync with the BioC svn, i.e. the DESCRIPTION in https://github.com/Bioconductor-mirror/ensembldb/blob/master/DESCRIPTION is still at version 1.99.14 while in the svn it's already 2.1.0.
>> First I thought the sync is not yet finished, but the release-3.5 was already created on the github mirror, so I guess sync must have been stuck somewhere.
>>         [[alternative HTML version deleted]]
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