[Bioc-devel] Error in veracruz2: object 'R_svmtrain' not found

[Obenchain, Valerie]

Hi,

Looks like this was a glitch in rtracklayer and has been fixed:

------------------------------------------------------------------------
r127902 | m.lawrence | 2017-03-31 04:37:23 -0700 (Fri, 31 Mar 2017) | 2
lines

do not try to import pmapFromTranscripts from GenomicAlignments

My guess is that R_svmtrain could not be created because of the
rtracklayer error. I'm not sure why we only saw this in veracruz2 ...
given the date of the fix we should see this clear up on Saturday's
build report.

Valerie



On 03/31/2017 01:55 AM, Mattia Chiesa wrote:
> Hi,
>
> My package DaMiRseq fails to build in veracruz2 server with this error:
>
> Quitting from lines 424-428 (DaMiRseq.Rnw)
> Error: processing vignette 'DaMiRseq.Rnw' failed with diagnostics:
> object 'R_svmtrain' not found
>
> Moreover, this message appeared in latest nightly builds:
>
> No methods found in "GenomicAlignments" for requests: pmapFromTranscripts
>
> I got 'ERROR' only in veracruz2 while the status in malbec2, tokay2 and toluka2 is 'OK'.
>
>
> Here the details:
>
> http://bioconductor.org/checkResults/devel/bioc-LATEST/DaMiRseq/
>
>
> How to handle this?
>
> Thanks in advance,
>
> Mattia.
>
>
>
>
>
>
> Dr Mattia Chiesa,
> Biomedical Engineer, PhD in Bioengineering and Bioinformatics
>
> Immunology and Functional Genomics Unit
> Via Parea, 4 - 20138 Milano, Italy
> T +39 02 58002.852 F +39 02 58002.750
> E mchiesa at ccfm.it<mailto:mchiesa at ccfm.it>
> W www.cardiologicomonzino.it<http://www.cardiologicomonzino.it/>
>
> Centro Cardiologico Monzino
>
> 	[[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>



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