[Bioc-devel] pc algorithm library missing on linux builder

Hervé Pagès hpages at fredhutch.org
Thu Mar 30 07:23:55 CEST 2017

Hi Martin,

Not sure what happened during automatic installation of CRAN package
pcalg by the build system on malbec2 but it seems that the installed
package ended up being in a broken state. I just went on malbec2 and
re-installed the package by hand so normally epiNEM should look all
green on Friday and finally get its first landing page!


On 03/29/2017 05:21 AM, Pirkl  Martin wrote:
> Hi,
> our package epiNEM produces an error on the linux builder, due to some missing pcalg library. This seems to be an error on the builder’s end, because the packages ddgraph and miRLAB suffer the same error, also exclusively for the linux builder. Does that problem go hand in hand with the fact that epiNEM, as a new package, does not have a bioconductor page, yet?
> https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_epiNEM_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=IQ80f2gw2TiMG5P5VdfItKwCWqUWiqsOAFV9iOTcnWE&s=Kgt1MtgBzuNYGNwW_1TeM75NsCC6MLapIqNLhO5jVXA&e=
> Best,
> Martin
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Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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