[Bioc-devel] tximport fails to build on Windows
Michael Love
michaelisaiahlove at gmail.com
Mon Mar 20 21:37:37 CET 2017
Anyone have any ideas for how to debug this?
I get an error from the tximport vignette on tokay2, but I can't
figure out what could be the issue:
...
1 Quitting from lines 185-189 (tximport.Rmd)
Error: processing vignette 'tximport.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
http://master.bioconductor.org/checkResults/devel/bioc-LATEST/tximport/tokay2-buildsrc.html
Those lines look innocuous to me, and work fine on Linux and Mac:
184 ```{r}
185 files <- file.path(dir,"sailfish", samples$run, "quant.sf")
186 names(files) <- paste0("sample",1:6)
187 txi.sailfish <- tximport(files, type="sailfish", tx2gene=tx2gene)
188 head(txi.sailfish$counts)
189 ```
I tried bumping the version and I still get the error from tokay2.
More information about the Bioc-devel
mailing list