[Bioc-devel] build report with error

[Rodriguez Martinez, Andrea]

Hi,


I just noticed that my packages MetaboSignal and MWASTools have a build report with error for Windows in the devel branch. I wonder if there is something I can do about this. See the specific error messages below:


-For MetaboSignal it says:

##
### Running command:
###
###   chmod a+r MetaboSignal -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MetaboSignal
###
##############################################################################
##############################################################################


* checking for file 'MetaboSignal/DESCRIPTION' ... OK
* preparing 'MetaboSignal':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
Warning: running command '"C:/Users/biocbuild/bbs-3.5-bioc/R/bin/x64/Rcmd.exe" INSTALL -l "C:\Users\biocbuild\bbs-3.5-bioc\tmpdir\RtmpUdQmpF\Rinst2180771a78c0" --no-multiarch "C:/Users/biocbuild/bbs-3.5-bioc/tmpdir/RtmpUdQmpF/Rbuild218072f9557/MetaboSignal"' had status 1
      -----------------------------------
* installing *source* package 'MetaboSignal' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
  there is no package called 'Biobase'
ERROR: lazy loading failed for package 'MetaboSignal'
* removing 'C:/Users/biocbuild/bbs-3.5-bioc/tmpdir/RtmpUdQmpF/Rinst2180771a78c0/MetaboSignal'
      -----------------------------------
ERROR: package installation failed

-For MWASTools it says:

##############################################################################

##############################################################################
###
### Running command:
###
###   rm -rf MWASTools.buildbin-libdir && mkdir MWASTools.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/MWASTools_0.99.18.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=MWASTools.buildbin-libdir --merge-multiarch MWASTools_0.99.18.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL MWASTools_0.99.18.zip  && rm MWASTools_0.99.18.tar.gz MWASTools_0.99.18.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1418k  100 1418k    0     0  52.5M      0 --:--:-- --:--:-- --:--:-- 55.4M

install for i386

* installing *source* package 'MWASTools' ...
** R
** data
*** moving datasets to lazyload DB
Warning: namespace 'SummarizedExperiment' is not available and has been replaced
by .GlobalEnv when processing object 'metabo_SE'
Warning: namespace 'SummarizedExperiment' is not available and has been replaced
by .GlobalEnv when processing object 'metabo_SE'
Warning: namespace 'SummarizedExperiment' is not available and has been replaced
by .GlobalEnv when processing object 'targetMetabo_SE'
Warning: namespace 'SummarizedExperiment' is not available and has been replaced
by .GlobalEnv when processing object 'targetMetabo_SE'
** inst
** preparing package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
  there is no package called 'S4Vectors'
ERROR: lazy loading failed for package 'MWASTools'
* removing 'C:/Users/biocbuild/bbs-3.5-bioc/meat/MWASTools.buildbin-libdir/MWASTools'
Warning: running command 'C:/Users/biocbuild/bbs-3.5-bioc/R/bin/i386/Rcmd.exe INSTALL --library=MWASTools.buildbin-libdir MWASTools_0.99.18.tar.gz --no-multiarch' had status 1

Thanks very much,


Andrea

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