[Bioc-devel] Vignette for xcms fails to build on tokay1

Rainer Johannes Johannes.Rainer at eurac.edu
Thu Jul 27 12:23:24 CEST 2017

Dear all,

one of the xcms vignettes fails to build on tokay1 recently with the error message:

Warning: running command '"C:\PROGRA˜1\MIKTEX˜1.9\miktex\bin\x64\texify.exe" --quiet --pdf "xcmsDirect.tex" --max-iterations=20 -I "C:/Users/biocbuild/bbs-3.6-bioc/R/share/texmf/tex/latex" -I "C:/Users/biocbuild/bbs-3.6-bioc/R/share/texmf/bibtex/bst"' had status 1
Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
  Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for vignette with name 'xcmsDirect'. The following files exist in directory '.': 'FlowChart.graffle', 'FlowChart.pdf', 'benchmarking.Rmd-notrun', 'biomed-central.csl', 'example.tsv', 'new_functionality.R', 'new_functionality.Rmd', 'new_functionality.html', 'new_functionality.org', 'references.bib', 'xcms.bib', 'xcms.org<http://xcms.org>', 'xcmsDirect-005.pdf', 'xcmsDirect.Rnw', 'xcmsDirect.tex', 'xcmsInstall.Rnw', 'xcmsMSn.Rnw', 'xcmsPreprocess.Rnw-notrun'
Calls: <Anonymous> -> find_vignette_product
Execution halted

is this some problem with tokay1 or is it related to the vignette (I have no problems building this vignette in my Windows build machine)?

thanks, jo

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