[Bioc-devel] Bioconductor git server beta testing begins now.

[Turaga, Nitesh]

Dear Maintainers,

For those of you who have submitted your public github id instead of your
public SSH key,  please make sure that the link
`www.github.com/<username>.keys` is valid and shows your SSH key.

If that is not valid, we are not able to add your SSH key to the
bioconductor server.

Thanks,

Nitesh


>>Dear Maintainers
>>
>>As announced earlier this year, Bioconductor is moving version control
>>systems from SVN to Git.
>>
>>The plan
>>------------
>>
>>- Software, experiment data, and workflow packages will be maintained
>>  as git repositories created to capture the full commit history of
>>  each package. (the commit history of the 'data_store' portion of
>>  data experiment packages will unfortunately not carry forward to
>>  git).
>>
>>- Read-only (user) access for each package is available via https,
>>  e.g.,
>>
>>      git clone 
>>https://git.bioconductor.org/packages/SummarizedExperiment
>>
>>- Read-write (developer) access for each package is available via ssh,
>>e.g.,
>>
>>      git clone git at git.bioconductor.org:packages/SummarizedExperiment
>>
>>  Developers MUST SHARE public key(s) with Bioconductor. The process
>>  for this during the beta phase is outlined below.
>>
>>- The build system and other core infrastructure will use
>>  git.bioconductor.org as the canonical source after the transition.
>>
>>- Developers may wish to independently clone and maintain github or
>>  other repositories to support their package. Developers are
>>  responsible for pushing changes from these cloned repositories to
>>  the canonical source.
>>
>>- https://github.com/Bioconductor-mirror will be removed after the
>>  transition.
>>
>>Beta testers
>>----------------
>>
>>We are starting Beta testing now. We encourage as many people as
>>possible to become beta-testers, either as users (via git clone
>>https://...) or maintainers (via git clone git at ...).
>>
>>All software, data experiment, and workflow packages are available at
>>
>>      (read-only) git clone
>>https://git.bioconductor.org/packages/<package>
>>      (read / write) git clone
>>git at git.bioconductor.org:packages/<package>
>>    
>>These are STATIC SNAPSHOTS of SVN. Developers are encouraged to commit
>>to these repositories, but the commits are not propagated to svn and
>>will be lost at the end of the beta phase.
>>
>>For maintainers, Bioconductor needs your SSH public key. We have
>>prepared a Google form for this
>>
>>    https://goo.gl/forms/eg36vcBkIUjfZfLe2
>>
>>The form requires your Bioconductor provided SVN username, and your
>>Github user name (to retrieve your public keys from
>>https://github.com/<your-github-id>.keys) OR SSH key. Currently, the
>>form is processed on an approximately daily basis, so there is a delay
>>between credential submission and developer access.
>>
>>(IMPORTANT) As a beta tester, we ask that you work through the
>>'scenarios' at
>>
>>    https://github.com/Bioconductor/bioc_git_transition/tree/master/doc
>>
>>Package authors and maintainers, please take the extra measure to
>>check that your package history is complete to July 4th, i.e commit
>>history,
>>files, folders and all Bioconductor components.
>>
>>If you are new to Git or Github, there are learning materials online
>>https://try.github.io
>>
>>We encourage pull-requests on documentation. Please post other
>>beta-test feedback from the experience with the new git server to this
>>mailing list.
>>
>>Transition
>>--------------
>>
>>Important Dates:
>>
>>Transition: on date T, tentatively July 31st.
>>
>>Until July 30th 2017:
>>
>>    Beta testing phase.
>>
>>
>>July 26th 2017:
>>
>>    Developer day demo session on Bioconductor's GIT transition/usage
>>    going forward. (30-45 mins) Be sure to attend if you are at
>>    Bioc2017, Boston. Slides will be made public.
>>
>>T - 2: Final SVN snapshot of data experiment packages
>>
>>    No more SVN commits to Data Experiment packages.
>>
>>T: Day of transition.
>>
>>    All SVN commits to software, experiment data, and workflow
>>    repositories are stopped, forever.
>>
>>   Git repositories are updated to most recent svn version on day T.
>>    (We estimate that this will take about 6 hours; no commits
>>    possible on either svn or git).
>>
>>    Git commits resume. Please make sure to commit to
>>    git at git.bioconductor.org.
>>
>>    Only git sever commits moving forward.
>>
>>This is an important step for the infrastructure of the project. If
>>you have questions please reply to this email, i.e. to the bioc-devel
>>mailing list. If there are any issues with individual packages, make
>>sure to list them out.
>>
>>Best Regards,
>>
>>Nitesh
>>Bioconductor Core Team
>



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