[Bioc-devel] error from biocLite on OSX with R-devel / Bioc-devel
stvjc at channing.harvard.edu
Mon Jan 30 17:09:56 CET 2017
For what it is worth I ran into the same situation with a new employee
about two weeks ago.
We got around it by doing manual installs of required packages but did not
obtain a systematic solution.
We did not have time to trace the situation sufficiently for a report.
On Mon, Jan 30, 2017 at 9:52 AM, Levi Waldron <lwaldron.research at gmail.com>
> On Mon, Jan 30, 2017 at 12:23 AM, Martin Morgan
> <martin.morgan at roswellpark.org> wrote:
> > It seems like this is a local cache of the rstudio file that describes
> > mac repository. Maybe your vanilla execution of install.packages() does
> > use the repository that BiocInstaller does. So maybe
> > install.packages("lazyeval", repos=biocinstallRepos())
> > fails (maybe if repeated a second time)?
> Yes, you're right, it fails.
> > This would sound like an RStudio
> > problem. Is a work-around possible with
> > options(repos=c(CRAN="https://cran.r-project.org"))
> > biocinstallRepos() # should pick up new repository
> > biocLite("lazyeval")
> This works for one install, then subsequently produces the same error:
> Browse> file
>  "/var/folders/6n/cj15_ryn3ls0jtvfhtxztq080000gn/T//
> Bioc-devel at r-project.org mailing list
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