[Bioc-devel] error from biocLite on OSX with R-devel / Bioc-devel

[Levi Waldron]

On Sun, Jan 29, 2017 at 11:36 PM, Martin Morgan
<martin.morgan at roswellpark.org> wrote:
>
>
> can you try to find out what file it is trying to read and what function call, e.g.,
>
>   options(error=recover)
>   biocLite("lazyeval")
>
> That should get the call stack; choose readRDS and look for the 'file' variable for the exact file.
>
> Martin


It is:

/var/folders/6n/cj15_ryn3ls0jtvfhtxztq080000gn/T//Rtmpvc0v9g/repos_https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fmavericks%2Fcontrib%2F3.4.rds


Lewis-MacBook-Air:~ lw391$ ls -l
/var/folders/6n/cj15_ryn3ls0jtvfhtxztq080000gn/T//Rtmpvc0v9g/repos_https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fmavericks%2Fcontrib%2F3.4.rds

-rw-r--r--  1 lw391  staff  0 Jan 29 23:49
/var/folders/6n/cj15_ryn3ls0jtvfhtxztq080000gn/T//Rtmpvc0v9g/repos_https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fmavericks%2Fcontrib%2F3.4.rds

I removed this file, then I could call biocLite once, but the second
time got the same error and the same file:

/var/folders/6n/cj15_ryn3ls0jtvfhtxztq080000gn/T//Rtmpvc0v9g/repos_https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fmacosx%2Fmavericks%2Fcontrib%2F3.4.rds