[Bioc-devel] sort(RangedSummarizedExperiment) fails

[Vincent Carey]

after example(RangedSummarizedExperiment)

> rse1

class: RangedSummarizedExperiment

dim: 200 6

metadata(0):

assays(1): counts

rownames: NULL

rowData names(1): feature_id

colnames(6): A B ... E F

colData names(1): Treatment

> sort(rse1)

Error in get(name, envir = asNamespace(pkg), inherits = FALSE) :

  object '.order_GenomicRanges' not found


Enter a frame number, or 0 to exit


1: sort(rse1)

2: sort(rse1)

3: .local(x, decreasing, ...)

4: GenomicRanges:::.order_GenomicRanges

5: get(name, envir = asNamespace(pkg), inherits = FALSE)


> sessionInfo()

R Under development (unstable) (2017-02-08 r72142)

Platform: x86_64-pc-linux-gnu (64-bit)

Running under: CentOS release 6.8 (Final)


locale:

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C

 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8

 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8

 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C

 [9] LC_ADDRESS=C               LC_TELEPHONE=C

[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C


attached base packages:

[1] parallel  stats4    stats     graphics  grDevices utils     datasets

[8] methods   base


other attached packages:

 [1] SummarizedExperiment_1.5.6 DelayedArray_0.1.7

 [3] matrixStats_0.51.0         Biobase_2.35.0

 [5] GenomicRanges_1.27.22      GenomeInfoDb_1.11.9

 [7] IRanges_2.9.18             S4Vectors_0.13.15

 [9] BiocGenerics_0.21.3        BiocInstaller_1.25.3


loaded via a namespace (and not attached):

 [1] lattice_0.20-34         bitops_1.0-6            grid_3.4.0

 [4] zlibbioc_1.21.0         XVector_0.15.2          Matrix_1.2-8

 [7] tools_3.4.0             RCurl_1.95-4.8          compiler_3.4.0

[10] GenomeInfoDbData_0.99.0



Selection: 0

	[[alternative HTML version deleted]]