[Bioc-devel] Rsamtools does not export "path"

Hervé Pagès hpages at fredhutch.org
Wed Dec 20 03:52:24 CET 2017

Hi Jianhong,

I didn't touch the "path" method defined in Rsamtools, only moved
the path() generic from Rsamtools to BiocGenerics. This broke a few
NAMESPACE in other packages that Marcel and I are in the process of
fixing. The build report should already look much better tomorrow
(Wed 20) and most of the packages that don't install right now because
of these NAMESPACE problems should install again tomorrow (after
running biocLite()).

Sorry for the inconvenience.


On 12/18/2017 09:48 AM, Ou, Jianhong wrote:
> Hi Herve,
> The recent update of Rsamtools is using a new method of path. However, 
> you did not export this method. Will you export it? Or we should drop 
> the dependence of this method?
> Yours Sincerely,
> Jianhong Ou
> TEL: 508-856-5379
> LRB 608
> Bioinformatician of Bioinformatics core at
> Department of Molecular, Cell and Cancer Biology
> UMASS Medical School
> 364 Plantation Street Worcester,
> MA 01605
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Hervé Pagès

Program in Computational Biology
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