[Bioc-devel] workflow page reorganization

Aaron Lun alun at wehi.edu.au
Fri Dec 15 14:08:16 CET 2017


My proposed categories reflect my vested interests, but here goes:

- Gene expression:
    - rnaseqGene
    - RNAseq123
    - ExpressionNormalizationWorkflow
    - RnaSeqGeneEdgeRQL

- Epigenomics: (not quite sure what to call this)
    - chipseqDB
    - methylationArrayAnalysis
    - generegulation

- Single cell:
    - simpleSingleCell
    - cytofWorkflow (or in proteomics?)

- Proteomics:
    - proteomics
    - highthroughputassays
    - cytofWorkflow (see above)

- Variant calling:
    - Variant calling
    - Nucleotide tallies
    - eQTL

- Resource querying: (needs a better name)
    - recountWorkflow
    - TCGAWorkflow

- Other:
    - everything else.

I haven't looked at the Basic workflows, which are probably basic enough 
to be lumped together in that existing section.

-A

On 15/12/17 12:33, Shepherd, Lori wrote:
> Hello all,
> 
> 
> There has been a request to reorganize the workflow page as workflows have grown past basic and advanced.
> 
> 
> http://bioconductor.org/help/workflows/
> 
> 
> We wanted to check with the community what your thoughts were for categories.
> 
> Thank you for your suggestions.
> 
> 
> 
> Lori Shepherd
> 
> Bioconductor Core Team
> 
> Roswell Park Cancer Institute
> 
> Department of Biostatistics & Bioinformatics
> 
> Elm & Carlton Streets
> 
> Buffalo, New York 14263
> 
> 
> This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 


More information about the Bioc-devel mailing list