[Bioc-devel] New pre-receive hook on git.bioconductor.org

[Angerer, Philipp]

hi nitesh, 

thank you, it worked now! 

best, philipp 


Von: "Nitesh Turaga" <Nitesh.Turaga at RoswellPark.org> 
An: "Philipp Angerer" <philipp.angerer at helmholtz-muenchen.de> 
CC: "bioc-devel" <bioc-devel at r-project.org> 
Gesendet: Mittwoch, 30. August 2017 14:04:50 
Betreff: Re: [Bioc-devel] New pre-receive hook on git.bioconductor.org 

Hi Philipp, 

Please try again. 

Best, 

Nitesh 


> On Aug 30, 2017, at 4:33 AM, Angerer, Philipp <philipp.angerer at helmholtz-muenchen.de> wrote: 
> 
> hi, sadly my duplicate commits are authored by Herve Pages and already in the repo, so i can’t work at all on my package (destiny). 
> 
> $ git push 
> Zähle Objekte: 12, Fertig. 
> Delta compression using up to 8 threads. 
> Komprimiere Objekte: 100% (12/12), Fertig. 
> Schreibe Objekte: 100% (12/12), 1.14 KiB | 1.14 MiB/s, Fertig. 
> Total 12 (delta 9), reused 0 (delta 0) 
> remote: Error: duplicate commits. 
> remote: 
> remote: There are duplicate commits in your commit history, These cannot be 
> remote: pushed to the Bioconductor git server. Please make sure that this is 
> remote: resolved. 
> remote: 
> remote: Take a look at the documentation to fix this, 
> remote: https://bioconductor.org/developers/how-to/git/sync-existing-repositories/, 
> remote: particularly, point #8 (force Bioconductor master to Github master). 
> remote: 
> remote: For more information, or help resolving this issue, contact 
> remote: <bioc-devel at r-project.org>. Provide the error, the package name and 
> remote: any other details we might need. 
> remote: 
> remote: Use 
> remote: 
> remote: git show 72261dcfd1d1e7adf73f16bb4e6d9e38eecccbf9 
> remote: git show b3fb272fc4517faab44a3792825a07460eadc345 
> remote: 
> remote: to see body of commits. 
> remote: 
> To git.bioconductor.org:packages/destiny 
> ! [remote rejected] RELEASE_3_5 -> RELEASE_3_5 (pre-receive hook declined) 
> error: Fehler beim Versenden einiger Referenzen nach 'git at git.bioconductor.org:packages/destiny' 
> $ git show 72261dcfd1d1e7adf73f16bb4e6d9e38eecccbf9 
> commit 72261dcfd1d1e7adf73f16bb4e6d9e38eecccbf9 
> Author: Herve Pages <hpages at fhcrc.org> 
> Date: Mon Apr 24 19:45:44 2017 +0000 
> 
> Creating branch for BioC 3.5 release 
> 
> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/destiny@129128 bc3139a8-67e5-0310-9ffc-ced21a209358 
> $ git show b3fb272fc4517faab44a3792825a07460eadc345 
> commit b3fb272fc4517faab44a3792825a07460eadc345 
> Author: Herve Pages <hpages at fhcrc.org> 
> Date: Mon Apr 24 19:25:24 2017 +0000 
> 
> bump x.y.z versions to even y prior to creation of 3_5 branch 
> 
> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/destiny@129126 bc3139a8-67e5-0310-9ffc-ced21a209358 
> 
> diff --git a/DESCRIPTION b/DESCRIPTION 
> index 9a01095..2368e6d 100644 
> --- a/DESCRIPTION 
> +++ b/DESCRIPTION 
> @@ -1,7 +1,7 @@ 
> Package: destiny 
> Type: Package 
> Title: Creates diffusion maps 
> -Version: 2.2.11 
> +Version: 2.4.0 
> Date: 2014-12-19 
> Authors at R: c( 
> 
> Von: "Nitesh Turaga" <Nitesh.Turaga at RoswellPark.org> 
> An: "bioc-devel" <bioc-devel at r-project.org> 
> Gesendet: Dienstag, 29. August 2017 18:15:38 
> Betreff: [Bioc-devel] New pre-receive hook on git.bioconductor.org 
> 
> Hi Maintainers, 
> 
> We have added a new pre-receive hook on our git.bioconductor.org<http://git.bioconductor.org> system today. We now prevent large-files (>5MB) from being committed. We also prevent ‘duplicate' commits. 
> 
> A duplicate commit is when two commits have the same content, but different SHA1 signatures. This can happen, for instance, when you clone git.bioconductor.org<http://git.bioconductor.org> and then merge with your local git development repository or github.com/Bioconductor-mirror<http://github.com/Bioconductor-mirror> repository. The best way to approach this issue is in the documentation, http://bioconductor.org/developers/how-to/git/abandon-changes#force-bioconductor--to-github-, including the option to cherry-pick local commits into the master branch synced from git.bioconductor.org<http://git.bioconductor.org>. 
> 
> Please let us know if you have any questions. 
> 
> Best, 
> 
> Nitesh 
> 
> 
> This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. 
> [[alternative HTML version deleted]] 
> 
> _______________________________________________ 
> Bioc-devel at r-project.org mailing list 
> https://stat.ethz.ch/mailman/listinfo/bioc-devel 
> 
> 
> 
> Helmholtz Zentrum München 
> Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH) 
> Ingolstädter Landstr. 1 
> 85764 Neuherberg 
> www.helmholtz-muenchen.de 
> Aufsichtsratsvorsitzende: MinDir'in Bärbel Brumme-Bothe 
> Geschäftsführer: Prof. Dr. Günther Wess, Heinrich Baßler, Dr. Alfons Enhsen 
> Registergericht: Amtsgericht München HRB 6466 
> USt-IdNr: DE 129521671 



This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. 

 


Helmholtz Zentrum Muenchen

Deutsches Forschungszentrum fuer Gesundheit und Umwelt (GmbH)

Ingolstaedter Landstr. 1

85764 Neuherberg

www.helmholtz-muenchen.de

Aufsichtsratsvorsitzende: MinDir'in Baerbel Brumme-Bothe

Geschaeftsfuehrer: Prof. Dr. Guenther Wess, Heinrich Bassler, Dr. Alfons Enhsen

Registergericht: Amtsgericht Muenchen HRB 6466

USt-IdNr: DE 129521671


	[[alternative HTML version deleted]]