[Bioc-devel] New pre-receive hook on git.bioconductor.org

Angerer, Philipp philipp.angerer at helmholtz-muenchen.de
Wed Aug 30 10:33:15 CEST 2017

hi, sadly my duplicate commits are authored by Herve Pages and already in the repo , so i can’t work at all on my package (destiny). 

$ git push 
Zähle Objekte: 12, Fertig. 
Delta compression using up to 8 threads. 
Komprimiere Objekte: 100% (12/12), Fertig. 
Schreibe Objekte: 100% (12/12), 1.14 KiB | 1.14 MiB/s, Fertig. 
Total 12 (delta 9), reused 0 (delta 0) 
remote: Error: duplicate commits. 
remote: There are duplicate commits in your commit history, These cannot be 
remote: pushed to the Bioconductor git server. Please make sure that this is 
remote: resolved. 
remote: Take a look at the documentation to fix this, 
remote: https://bioconductor.org/developers/how-to/git/sync-existing-repositories/, 
remote: particularly, point #8 (force Bioconductor master to Github master). 
remote: For more information, or help resolving this issue, contact 
remote: <bioc-devel at r-project.org>. Provide the error, the package name and 
remote: any other details we might need. 
remote: Use 
remote: git show 72261dcfd1d1e7adf73f16bb4e6d9e38eecccbf9 
remote: git show b3fb272fc4517faab44a3792825a07460eadc345 
remote: to see body of commits. 
To git.bioconductor.org:packages/destiny 
! [remote rejected] RELEASE_3_5 -> RELEASE_3_5 (pre-receive hook declined) 
error: Fehler beim Versenden einiger Referenzen nach 'git at git.bioconductor.org:packages/destiny' 
$ git show 72261dcfd1d1e7adf73f16bb4e6d9e38eecccbf9 
commit 72261dcfd1d1e7adf73f16bb4e6d9e38eecccbf9 
Author: Herve Pages <hpages at fhcrc.org> 
Date: Mon Apr 24 19:45:44 2017 +0000 

Creating branch for BioC 3.5 release 

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/destiny@129128 bc3139a8-67e5-0310-9ffc-ced21a209358 
$ git show b3fb272fc4517faab44a3792825a07460eadc345 
commit b3fb272fc4517faab44a3792825a07460eadc345 
Author: Herve Pages <hpages at fhcrc.org> 
Date: Mon Apr 24 19:25:24 2017 +0000 

bump x.y.z versions to even y prior to creation of 3_5 branch 

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/destiny@129126 bc3139a8-67e5-0310-9ffc-ced21a209358 

index 9a01095..2368e6d 100644 
@@ -1,7 +1,7 @@ 
Package: destiny 
Type: Package 
Title: Creates diffusion maps 
-Version: 2.2.11 
+Version: 2.4.0 
Date: 2014-12-19 
Authors at R: c( 

Von: "Nitesh Turaga" <Nitesh.Turaga at RoswellPark.org> 
An: "bioc-devel" <bioc-devel at r-project.org> 
Gesendet: Dienstag, 29. August 2017 18:15:38 
Betreff: [Bioc-devel] New pre-receive hook on git.bioconductor.org 

Hi Maintainers, 

We have added a new pre-receive hook on our git.bioconductor.org<http://git.bioconductor.org> system today. We now prevent large-files (>5MB) from being committed. We also prevent ‘duplicate' commits. 

A duplicate commit is when two commits have the same content, but different SHA1 signatures. This can happen, for instance, when you clone git.bioconductor.org<http://git.bioconductor.org> and then merge with your local git development repository or github.com/Bioconductor-mirror<http://github.com/Bioconductor-mirror> repository. The best way to approach this issue is in the documentation, http://bioconductor.org/developers/how-to/git/abandon-changes#force-bioconductor--to-github-, including the option to cherry-pick local commits into the master branch synced from git.bioconductor.org<http://git.bioconductor.org>. 

Please let us know if you have any questions. 



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