[Bioc-devel] Pushing changes to RELEASE_3_5

[Turaga, Nitesh]

Hi Laurent,

We are looking into it.

Nitesh


> On Aug 29, 2017, at 4:43 PM, Laurent Gatto <lg390 at cam.ac.uk> wrote:
> 
> 
> Dear Bioc devel,
> 
> I am having issues pushing code to the latest release. I currently have
> the following branches
> 
> -> % git branch -a
> * RELEASE_3_5
>  master
>  remotes/origin/HEAD -> origin/master
>  remotes/origin/RELEASE_3_5
>  remotes/origin/master
>  remotes/upstream/RELEASE_2_14
>  remotes/upstream/RELEASE_3_0
>  remotes/upstream/RELEASE_3_1
>  remotes/upstream/RELEASE_3_2
>  remotes/upstream/RELEASE_3_3
>  remotes/upstream/RELEASE_3_4
>  remotes/upstream/RELEASE_3_5
>  remotes/upstream/master
> 
> My current branch is a local copy of upstreams/RELEASE_3_5, freshly
> created with
> 
>  git checkout -b RELEASE_3_5 upstream/RELEASE_3_5
> 
> I can push my local changes to github with
> 
>  git push origin RELEASE_3_5
> 
> but can't to the Bioc git server
> 
> -> % git push upstream RELEASE_3_5 
> 
> Counting objects: 43, done.
> Delta compression using up to 4 threads.
> Compressing objects: 100% (6/6), done.
> Writing objects: 100% (7/7), 633 bytes | 0 bytes/s, done.
> Total 7 (delta 4), reused 0 (delta 0)
> remote: Error: duplicate commits.
> remote: 
> remote: There are duplicate commits in your commit history, These cannot be
> remote: pushed to the Bioconductor git server. Please make sure that this is
> remote: resolved.
> remote: 
> remote: Take a look at the documentation to fix this,
> remote: https://bioconductor.org/developers/how-to/git/sync-existing-repositories/,
> remote: particularly, point #8 (force Bioconductor master to Github master).
> remote: 
> remote: For more information, or help resolving this issue, contact
> remote: <bioc-devel at r-project.org>. Provide the error, the package name and
> remote: any other details we might need.
> remote: 
> remote: Use
> remote: 
> remote:     git show cd9660b1dab49df98cf3b5b36635d0b6956be832
> remote:     git show 7670203afb2548072d96667e3677a93b3917a547
> remote: 
> remote: to see body of commits.
> remote: 
> To git at git.bioconductor.org:packages/rpx.git
> ! [remote rejected] RELEASE_3_5 -> RELEASE_3_5 (pre-receive hook declined)
> error: failed to push some refs to 'git at git.bioconductor.org:packages/rpx.git  
> 
> But there aren't any duplicated commits, as far as I can see
> 
> lg390 at elyacin [09:22:03] [~/dev/rpx] [RELEASE_3_5]
> -> % git log --oneline | wc                            
>     59     471    3040
> lg390 at elyacin [09:22:24] [~/dev/rpx] [RELEASE_3_5]
> -> % git log --oneline | sort | uniq| wc
>     59     471    3040
> 
> Note that a similar procedure to push to upstream/master works.
> 
> Any help greatly appreciated.
> 
> Laurent
> 
> -- 
> Laurent Gatto | @lgatt0
> http://cpu.sysbiol.cam.ac.uk/
> http://lgatto.github.io/
> 
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel



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