[Bioc-devel] Updating package development version

Hervé Pagès hpages at fredhutch.org
Fri Aug 18 23:10:20 CEST 2017

Hi Pedro,

The build system didn't pick up your changes because of an issue with
the script that we use to propagate the latest package changes to the
build machines. Sorry for that. The issue should be fixed now so
hopefully you'll see CEMiTool 0.99.9 on tomorrow's build report
(the report is updated every day):


and also on the package landing page:


Don't hesitate to let us know if things don't look right.


On 08/18/2017 11:53 AM, James W. MacDonald wrote:
> On Fri, Aug 18, 2017 at 1:46 PM, Pedro Russo <pedrostrusso at gmail.com> wrote:
>> Dear maintainers,
>> I've followed the tutorials for updating my package CEMiTool in the new Git
>> server as detailed in:
>> https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bioconductor.org_developers_how-2Dto_git_bug-2Dfix-2D&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=H1WAQWYzwpfHNOWFNW3wGMBTMN4fLZ4Tql6ogaqwOlM&s=eUQYB_e3j9xcXHLEmJIArJXKQvOTfcgOeiaOWBudE-k&e=
>> in-release-and-devel/
>> including the steps
>> git checkout master
>> git push upstream master
>> git push origin master
>> However, when I execute useDevel() and biocLite("CEMiTool"), I see that the
>> changes I made aren't there.
> When did you make those changes? Do note that it takes a day or so for any
> changes to propagate through the build servers, so changes don't appear
> right away.
>> The url for my package,
>> https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_packages_devel_bioc_html_CEMiTool.html&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=H1WAQWYzwpfHNOWFNW3wGMBTMN4fLZ4Tql6ogaqwOlM&s=N2Jy5WDi8yLdiiDOuCVl9p3aLAxxW4wjBjipOuAyn6s&e=
>> also shows a previous version of the package.
>> I'm new to Bioconductor package maintenance, so I apologize if I'm missing
>> anything simple, but I'm really stuck!
>>          [[alternative HTML version deleted]]
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=H1WAQWYzwpfHNOWFNW3wGMBTMN4fLZ4Tql6ogaqwOlM&s=BTtiJCxJ4yOfedNC71Xnf_-CQ0KGCc_KwY2_MoR8w28&e=

Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fredhutch.org
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