[Bioc-devel] Vignette update after change in git mirror repo

[Maia Smith]

Thanks for your help, this makes much more sense.

Best,
Maia

On Sun, Apr 23, 2017 at 7:16 PM, Hervé Pagès <hpages at fredhutch.org> wrote:

> Nothing strange about this. As I said, all packages are built and
> checked daily and the build report is updated every day with the new
> results. But there is a lag between your changes in svn and what
> you see in the build report. More precisely, yesterday's report
> didn't reflect your latest changes yet because you made them on
> Apr 21 after the builds started.
>
> The 'Snapshot Date' information on the report tells you when the
> builds started. Also the 'Last Changed Rev' and 'Last Changed Date'
> information tells you which revision of your package is showing up
> in the report.
>
> Hope this helps,
> H.
>
>
> On 04/23/2017 06:29 PM, Maia Smith wrote:
>
>> Thanks, Hervé. Very strange, when I checked that link earlier today, it
>> appeared to still have errors. All good now!
>>
>> On Sun, Apr 23, 2017 at 4:49 PM, Hervé Pagès <hpages at fredhutch.org
>> <mailto:hpages at fredhutch.org>> wrote:
>>
>>     Hi Maia,
>>
>>     On 04/23/2017 10:09 AM, Maia Smith wrote:
>>
>>         Just an update - the checked in code is passing R CMD check on
>>         my computer
>>         (no errors, 1 warning), and has a version bump from 0.99.9 to
>>         0.99.10, but
>>         I still haven't seen a build attempt on bioconductor since I
>>         committed the
>>         code a few days ago.
>>
>>
>>     Not sure where you are looking at or what you mean exactly by "build
>>     attempt" but, unless our build system is down, every Bioconductor
>>     software package gets built and checked every day. timescape is no
>>     exception:
>>
>>       https://bioconductor.org/checkResults/3.5/bioc-LATEST/timescape/
>>     <https://urldefense.proofpoint.com/v2/url?u=https-3A__
>> bioconductor.org_checkResults_3.5_bioc-2DLATEST_timescape_&d=DwMFaQ&c=
>> eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJ
>> KaaPhzWA&m=au6Kb9Cm9VY8dX1RswkHcmWguNuvc5kctfqMH0i2CXw&s=
>> 8sfhDXEQz-lEhf-yL6sh9-5zs2epIXIHEq5d-v0Y0pg&e=>
>>
>>     Cheers,
>>     H.
>>
>>         I'm a bit worried because I know the release is
>>         occurring tomorrow...
>>
>>         On Sat, Apr 22, 2017 at 3:34 PM, Maia Smith <mas29 at sfu.ca
>>         <mailto:mas29 at sfu.ca>> wrote:
>>
>>             Thank you, Sean and James! I think this fixed the problem,
>>             Sean - will
>>             know when the build is finished today. MUCH appreciated.
>>
>>             On Fri, Apr 21, 2017 at 4:13 PM, Sean Davis
>>             <seandavi at gmail.com <mailto:seandavi at gmail.com>> wrote:
>>
>>                 Sorry I lead you astray, earlier, Maia.
>>
>>                 In general, you do not need to install the package in
>>                 the vignette. The
>>                 first code block in the vignette where you did
>>                 "eval=FALSE" is the way to
>>                 go.  The second code block where you actually do the
>>                 installation is
>>                 unnecessary. The package is installed by R in order to
>>                 build the vignette.
>>
>>                 Sean
>>
>>
>>
>>
>>                 [[alternative HTML version deleted]]
>>
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>>
>>     --
>>     Hervé Pagès
>>
>>     Program in Computational Biology
>>     Division of Public Health Sciences
>>     Fred Hutchinson Cancer Research Center
>>     1100 Fairview Ave. N, M1-B514
>>     P.O. Box 19024
>>     Seattle, WA 98109-1024
>>
>>     E-mail: hpages at fredhutch.org <mailto:hpages at fredhutch.org>
>>     Phone:  (206) 667-5791 <tel:%28206%29%20667-5791>
>>     Fax:    (206) 667-1319 <tel:%28206%29%20667-1319>
>>
>>
>>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages at fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>

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