[Bioc-devel] Object not found in vignette

[王棣台]

it should be in my package since anamiR version 1.1.8
That is weird.

Ti-Tai
________________________________________
Ä: Herv¨¦ Pag¨¨s [hpages at fredhutch.org]
¼Ä¼þÈÕÆÚ: 2017Äê4ÔÂ21ÈÕ ÉÏÎç 05:49
ÖÁ: Íõé¦Ì¨; bioc-devel at r-project.org
Ö÷Ö¼: Re: [Bioc-devel] Object not found in vignette

On 04/20/2017 02:45 PM, Herv¨¦ Pag¨¨s wrote:
> On 04/20/2017 02:36 PM, Íõé¦Ì¨ wrote:
>> That missing object is a list format data generated by myself,
>> so I don't think it would be about Depends, Imports, or Suggests.
>> Except this one, other generated data can be found.
>
> And where did you put this data set so that data(table_pre) can
> find it?

I mean the other generated data sets can be found because they are
in your package but I don't see the table_pre data set there. Did you forget
to commit it?

H.

>
> H.
>
>>
>> Ti-Tai
>>
>> ________________________________________
>> Ä: Herv¨¦ Pag¨¨s [hpages at fredhutch.org]
>> ¼Ä¼þÈÕÆÚ: 2017Äê4ÔÂ21ÈÕ ÉÏÎç 05:16
>> ÖÁ: Íõé¦Ì¨; bioc-devel at r-project.org
>> Ö÷Ö¼: Re: [Bioc-devel] Object not found in vignette
>>
>> Why don't you give us the name of your package so we can look
>> at it? I suspect something is missing in your Depends, Imports,
>> or Suggests field. Works for you because you have the missing
>> package installed on your machine but not on the build machine
>> because the package is missing there. The build system (and your
>> users) doesn't have this package so the vignette fails there.
>> By adding the package to Depends, Imports, or Suggests, you let
>> the build system know that this package needs to be installed
>> before it tries to build the vignette.
>>
>> H.
>>
>> On 04/20/2017 01:51 PM, Íõé¦Ì¨ wrote:
>>> Hi all,
>>>
>>> I kept getting the same Error from BUILD REPORT:
>>>
>>>
>>> Error: processing vignette 'IntroductionToanamiR.Rmd' failed with
>>> diagnostics:
>>> object 'table_pre' not found
>>>
>>> However, I did confirm my package with R CMD BUILD and CHECK before
>>> committing, and there was no errors and warnings.
>>>
>>> I really don't know what is the problem.
>>>
>>> Does anyone have the same error before?
>>>
>>> Many Thanks,
>>>
>>> Ti-Tai Wang
>>>
>>>       [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-devel at r-project.org mailing list
>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=TK-8woT9u1jslARFhHX9Y_pg-0Cg9S5vwIyvMX86pHU&s=3gO7lG40pXAtK-3RkKJ-yhJdwqUw-NZwBORf4PaN7xg&e=
>>>
>>>
>>
>> --
>> Herv¨¦ Pag¨¨s
>>
>> Program in Computational Biology
>> Division of Public Health Sciences
>> Fred Hutchinson Cancer Research Center
>> 1100 Fairview Ave. N, M1-B514
>> P.O. Box 19024
>> Seattle, WA 98109-1024
>>
>> E-mail: hpages at fredhutch.org
>> Phone:  (206) 667-5791
>> Fax:    (206) 667-1319
>>
>

--
Herv¨¦ Pag¨¨s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319