[Bioc-devel] Recent error in FamAgg with R-3.4rc

[Rainer Johannes]

An update: the fixed gap package is now in CRAN (https://cran.r-project.org/web/packages/gap/index.html). Once the Windows build machine uses/installs this updated CRAN package, the error in FamAgg will be fixed.

cheers, jo

On 19 Apr 2017, at 13:04, Rainer Johannes <Johannes.Rainer at eurac.edu<mailto:Johannes.Rainer at eurac.edu>> wrote:

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Thanks Lori for the info!

Actually, the maintainer of the gap package fixed the problem now in his package. Once the new version of gap is in CRAN (hopefully soon) the error in FamAgg will be gone too.

cheers, jo

On 19 Apr 2017, at 12:56, Shepherd, Lori <Lori.Shepherd at RoswellPark.org<mailto:Lori.Shepherd at RoswellPark.org><mailto:Lori.Shepherd at RoswellPark.org>> wrote:

You can continue to commit changes and bug corrections until this Friday 21.  After that date any change will remain in devel and if necessary would have to be corrected in release after the release is finished.

Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org<mailto:bioc-devel-bounces at r-project.org><mailto:bioc-devel-bounces at r-project.org>> on behalf of Rainer Johannes <Johannes.Rainer at eurac.edu<mailto:Johannes.Rainer at eurac.edu><mailto:Johannes.Rainer at eurac.edu>>
Sent: Wednesday, April 19, 2017 3:51:01 AM
To: bioc-devel
Subject: [Bioc-devel] Recent error in FamAgg with R-3.4rc

Dear all,

Somehow the FamAgg fails building with the recent R-3.4rc in Windows. I tracked down the error and it comes from a fortran code in a function from the "gap" CRAN package I'm using in one of the functions. I contacted the developer and in the meantime implemented a workaround in FamAgg.

My question now is if I can still submit changes to svn to fix this or is it already too late?

cheers, jo

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