[Bioc-devel] Check error on malbec2

[Aimin Yan]

Yes, it is.

Aimin

On Wed, Apr 5, 2017 at 7:20 AM, Shepherd, Lori <
Lori.Shepherd at roswellpark.org> wrote:

> Are these permanent system files or files that are created during
> examples/vignettes?
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Aimin Yan <aimin.at.work at gmail.com>
> *Sent:* Tuesday, April 4, 2017 3:41:02 PM
> *To:* Shepherd, Lori
> *Cc:* bioc-devel at r-project.org
> *Subject:* Re: [Bioc-devel] Check error on malbec2
>
> Thank you, I changed to use tempdir(), and it works now.
> One more question is how to locate those outputs in temporary directory since
> I want users to use those outputs.
>
> Aimin
>
> On Tue, Apr 4, 2017 at 2:00 PM, Shepherd, Lori <
> Lori.Shepherd at roswellpark.org> wrote:
>
>> Write and access your output to a temporary directory instead using
>> tempdir().
>>
>>
>>
>> Lori Shepherd
>>
>> Bioconductor Core Team
>>
>> Roswell Park Cancer Institute
>>
>> Department of Biostatistics & Bioinformatics
>>
>> Elm & Carlton Streets
>>
>> Buffalo, New York 14263
>> ------------------------------
>> *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Aimin
>> Yan <aimin.at.work at gmail.com>
>> *Sent:* Tuesday, April 4, 2017 1:45:28 PM
>> *To:* bioc-devel at r-project.org
>> *Subject:* [Bioc-devel] Check error on malbec2
>>
>> In the package I am trying ti submit to bioconductor, I got the following
>> error for check.
>>
>> Warning in dir.create(output.file.dir) :
>>   cannot create dir '/home/pkgbuild/OutputEnmap', reason 'Permission
>> denied'
>> Warning in file(file, ifelse(append, "a", "w")) :
>>   cannot open file '/home/pkgbuild/OutputEnmap/enrichmap_GO.xls': No such
>> file or directory
>> Error in file(file, ifelse(append, "a", "w")) :
>>   cannot open the connection
>> Calls: enrichmentmap -> write.table -> file
>>
>> It seems I do not have permission to create a directory.
>> Does anyone know how to fix this check error?
>>
>>
>> Thanks,
>> Aimin
>>
>>         [[alternative HTML version deleted]]
>>
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>
>
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