[Bioc-devel] Check error on malbec2

[Aimin Yan]

Thank you, I changed to use tempdir(), and it works now.
One more question is how to locate those outputs in temporary directory since
I want users to use those outputs.

Aimin

On Tue, Apr 4, 2017 at 2:00 PM, Shepherd, Lori <
Lori.Shepherd at roswellpark.org> wrote:

> Write and access your output to a temporary directory instead using
> tempdir().
>
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Cancer Institute
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Aimin
> Yan <aimin.at.work at gmail.com>
> *Sent:* Tuesday, April 4, 2017 1:45:28 PM
> *To:* bioc-devel at r-project.org
> *Subject:* [Bioc-devel] Check error on malbec2
>
> In the package I am trying ti submit to bioconductor, I got the following
> error for check.
>
> Warning in dir.create(output.file.dir) :
>   cannot create dir '/home/pkgbuild/OutputEnmap', reason 'Permission
> denied'
> Warning in file(file, ifelse(append, "a", "w")) :
>   cannot open file '/home/pkgbuild/OutputEnmap/enrichmap_GO.xls': No such
> file or directory
> Error in file(file, ifelse(append, "a", "w")) :
>   cannot open the connection
> Calls: enrichmentmap -> write.table -> file
>
> It seems I do not have permission to create a directory.
> Does anyone know how to fix this check error?
>
>
> Thanks,
> Aimin
>
>         [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
> This email message may contain legally privileged and/or confidential
> information. If you are not the intended recipient(s), or the employee or
> agent responsible for the delivery of this message to the intended
> recipient(s), you are hereby notified that any disclosure, copying,
> distribution, or use of this email message is prohibited. If you have
> received this message in error, please notify the sender immediately by
> e-mail and delete this email message from your computer. Thank you.

	[[alternative HTML version deleted]]