[Bioc-devel] ensembl 87 and 88 added to AnnotationHub

Shepherd, Lori Lori.Shepherd at RoswellPark.org
Tue Apr 4 15:01:45 CEST 2017

Hello all,

The ensembl 87 and 88 gtfs (converted to GRanges on the fly) have been added to AnnotationHub and are currently available:

> library(AnnotationHub)
> hub = AnnotationHub()
updating metadata: retrieving 1 resource

snapshotDate(): 2017-04-04

> length(query(hub, c("ensembl", "gtf", "release-87")))
[1] 218
> length(query(hub, c("ensembl", "gtf", "release-88")))
[1] 218

The fasta (twobit files) are not yet available but will be added before the upcoming release.

Thank you.

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

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