[Bioc-devel] Fwd: Question about a package submission

Vincent Carey stvjc at channing.harvard.edu
Thu Oct 27 14:59:54 CEST 2016

This was accidentally taken off list.  I don't have easy access to a devel
system at present so cannot investigate.
I did not check over the sessionInfo

Yes it produces the same error:
> c(GRanges(), GRanges())
Error in .Primitive("c")(<S4 object of class "Rle">, <S4 object of class
"Rle">) :
  could not find symbol "recursive" in environment of the generic function

> traceback()
7: .Primitive("c")(<S4 object of class "Rle">, <S4 object of class "Rle">)
6: do.call(c, lapply(x, seqnames))
5: do.call(c, lapply(x, seqnames))
4: .unlist_list_of_GenomicRanges(args, ignore.mcols = ignore.mcols)
3: .local(x, ...)
2: c(GRanges(), GRanges())
1: c(GRanges(), GRanges())
---------- Forwarded message ----------
From: Ioannis Vardaxis <ioannis.vardaxis at math.ntnu.no>
Date: Thu, Oct 27, 2016 at 7:27 AM
Subject: Re: [Bioc-devel] Question about a package submission
To: Vincent Carey <stvjc at channing.harvard.edu>

R Under development (unstable) (2016-10-20 r71540)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X El Capitan 10.11

[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets
 methods   base

other attached packages:
 [1] BSgenome.Hsapiens.UCSC.hg19_1.4.0 BSgenome_1.42.0
rtracklayer_1.30.4                Biostrings_2.43.0
XVector_0.15.0                    MACPET_0.99.0
 [8] SummarizedExperiment_1.4.0        Biobase_2.35.0
 GenomicRanges_1.27.2              GenomeInfoDb_1.11.0
IRanges_2.9.0                     S4Vectors_0.13.1

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.7              BiocInstaller_1.25.2     plyr_1.8.4
    iterators_1.0.8          bitops_1.0-6             tools_3.4.0
   zlibbioc_1.21.0          rpart_4.1-10             goftest_1.0-3
[11] nlme_3.1-128             gtable_0.2.0             lattice_0.20-34
     mgcv_1.8-15              foreach_1.4.3            Matrix_1.2-7.1
    doMC_1.3.4               grid_3.4.0               XML_3.98-1.4
[21] polyclip_1.5-6           ggplot2_2.1.0            deldir_0.1-12
     tensor_1.5               codetools_0.2-15         Rsamtools_1.27.2
    scales_0.4.0             intervals_0.15.1
GenomicAlignments_1.11.0 abind_1.4-5
[31] spatstat_1.47-0          colorspace_1.2-7         RCurl_1.95-4.8
Ioannis Vardaxis
Stipendiat IMF

From: Vincent Carey <stvjc at channing.harvard.edu>
Date: Thursday 27 October 2016 at 13:23
To: Ioannis Vardaxis <ioannis.vardaxis at math.ntnu.no>
Cc: "bioc-devel at r-project.org" <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Question about a package submission


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