[Bioc-devel] Question about a package submission

[Kevin RUE]

Hi Ioannis, Vincent,

I'm in the middle of debugging a similar situation myself, which may
provide a reproducible example at a package level.

I am in the process of setting up AppVeyor CI for my package, and my R CMD
check fails because of the same error.
https://ci.appveyor.com/project/kevinrue/tvtb/build/1.0.11

To debug the issue, I am also currently updating my local installation to
the latest devel packages (until biocValid() returns TRUE).
Once that is done, I may be able to provide a more practical minimal
working example for the issue (i.e. the code in one of my man pages).

Best,
Kevin



On Thu, Oct 27, 2016 at 12:23 PM, Vincent Carey <stvjc at channing.harvard.edu>
wrote:

> Please send a reproducible example with value of sessionInfo() at time of
> error.
>
> On Thu, Oct 27, 2016 at 7:06 AM, Ioannis Vardaxis <
> ioannis.vardaxis at math.ntnu.no> wrote:
>
> > Hi,
> >
> > I am using the R-devel version for writing an R package. I tried to use
> > the c(Granges,Granges) command to merge two Granges objects and I get the
> > following error:
> >
> > Error in .Primitive("c")(<S4 object of class "Rle">, <S4 object of class
> > "Rle">) :
> >   could not find symbol "recursive" in environment of the generic
> function
> >
> > I also get the same error when I use InteractionSet::GInteractions(
> Granges,
> > Granges).
> >
> > I downloaded IRanges, GenomicRanges and InteractionSet packages from the
> > source.
> >
> > How can I solve this error?
> >
> > Best,
> > Ioannis
> > --
> > Ioannis Vardaxis
> > Stipendiat IMF
> > NTNU
> >
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> >
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
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>
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