[Bioc-devel] ignoreSelf Option for findOverlaps of GenomicRanges Query

Michael Lawrence lawrence.michael at gene.com
Wed Oct 26 15:21:54 CEST 2016

There is only one general method for this case, on Vector,missing, so
it's consistent by definition. Note that ignoreSelf and
ignoreRedundant are defunct (and maybe even removed now). The new
argument names are drop.self and drop.redundant.


On Wed, Oct 26, 2016 at 3:00 AM, Dario Strbenac
<dstr7320 at uni.sydney.edu.au> wrote:
> Good day,
> For an IRanges object, findOverlaps has ignoreSelf and ignoreRedundant options. However, these aren't available for a GenomicRanges input object, even though the subject parameter is optional and a query GRanges object can be overlapped with itself. Could this be changed to be consistent?
> --------------------------------------
> Dario Strbenac
> University of Sydney
> Camperdown NSW 2050
> Australia
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