[Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

[Rodriguez Martinez, Andrea]

Thanks for your reply.


I have successfully removed BiocInstaller by hand, restart R, and then, installed with:


> source("https://bioconductor.org/biocLite.R")
Warning in install.packages :
  URL 'https://bioconductor.org/packages/3.4/bioc/bin/macosx/mavericks/contrib/3.4/PACKAGES.gz': status was '404 Not Found'
Warning in install.packages :
  URL 'https://bioconductor.org/packages/3.4/bioc/bin/macosx/mavericks/contrib/3.4/PACKAGES': status was '404 Not Found'
Warning in install.packages :
  unable to access index for repository https://bioconductor.org/packages/3.4/bioc/bin/macosx/mavericks/contrib/3.4:
  cannot download all files
installing the source package ‘BiocInstaller’

trying URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/BiocInstaller_1.24.0.tar.gz'
Content type 'application/x-gzip' length 17756 bytes (17 KB)
==================================================
downloaded 17 KB

* installing *source* package ‘BiocInstaller’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
Warning: Bioconductor version 3.4 is too old for R version 3.4.0; see
  https://bioconductor.org/install/#troubleshoot-biocinstaller
* DONE (BiocInstaller)

The downloaded source packages are in
‘/private/var/folders/z8/8jwlrtqx3270h05ncg1xwzs80000gn/T/RtmpRmVsc5/downloaded_packages’
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help

> BiocInstaller::useDevel()
Error: 'devel' version requires a more recent R


Thanks very much,

Andrea



________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Martin Morgan <martin.morgan at roswellpark.org>
Sent: 20 October 2016 10:28:34
To: Michael Lawrence; bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Fwd: BiocInstaller::useDevel() Error: 'devel' version requires a more recent R

On 10/20/2016 12:00 AM, Michael Lawrence wrote:
> ---------- Forwarded message ----------
> From: Rodriguez Martinez, Andrea <andrea.rodriguez-martinez13 at imperial.ac.uk>
> Date: Wed, Oct 19, 2016 at 3:33 PM
> Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel'
> version requires a more recent R
> To: Michael Lawrence <lawrence.michael at gene.com>
>
>
> Sorry again,
>
> I have just installed the R-devel version and now I get the following
> error: "Bioconductor does not yet support R version 3.4.0"

Thank you, you installed BiocInstaller in R-devel (R-3.4) before
Bioconductor officially supported R-3.4, and need to manually remove and
re-install BiocInstaller.

I have updated the online configure, so in a new session, try to load
the BiocInstaller package and you should now see

Bioconductor version 3.4 is too old for R version 3.4.0; see
   https://bioconductor.org/install/#troubleshoot-biocinstaller

The instructions are to remove BiocInstaller by hand

   remove.packages("BiocInstaller")
   remove.packages("BiocInstaller") # fails, if not then investigate

and install again

   source("https://bioconductor.org/biocLite.R")

Martin

>
> Thanks,
>
> Andrea
>
> ________________________________
> From: Rodriguez Martinez, Andrea
> Sent: 19 October 2016 23:13:06
> To: Michael Lawrence
> Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel'
> version requires a more recent R
>
>
> Thanks!
>
> ________________________________
> From: Michael Lawrence <lawrence.michael at gene.com>
> Sent: 19 October 2016 23:02:17
> To: Rodriguez Martinez, Andrea
> Cc: bioc-devel at r-project.org
> Subject: Re: [Bioc-devel] BiocInstaller::useDevel() Error: 'devel'
> version requires a more recent R
>
> Bioconductor 3.5 requires R-devel.
>
> On Wed, Oct 19, 2016 at 2:57 PM, Rodriguez Martinez, Andrea
> <andrea.rodriguez-martinez13 at imperial.ac.uk> wrote:
>> Hi,
>>
>>
>> I was just trying to use the devel branch, but I get this error message (using R.3.3.1)
>>
>>
>>> BiocInstaller::useDevel()
>>
>>> Error: 'devel' version requires a more recent R
>>
>>
>> Any help with this?
>>
>> Thanks very much in advance,
>>
>> Andrea
>>
>>         [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>


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