[Bioc-devel] Version on GitHub mirror different than Bioconductor

[Martin Morgan]

On 10/15/2016 08:56 PM, Raymond Cavalcante wrote:
> I noticed that v0.99.20 on the Bioc build servers have an error because of a missing file (inst/extdata/test_annotations_6_tx_gene_symbol.bed). Oddly, that file is present in rcavalcante/annotatr v0.99.20 (added in commit acc43cb), but didn't make it when migrated to Bioc for some reason.
>
> There actually some other changes from the acc43cb commit that didn't migrate to Bioc. Sorry for the trouble, but what's the easiest way to fix this?
>

I'm not really sure what went wrong; your package was accepted at 
version 0.99.19 but the script that processes the packages to svn pulled 
down (most of!) 0.99.20.

The most straight-forward step is to update svn to get it back in sync, 
following the directions in the acceptance email / at

http://bioconductor.org/developers/how-to/source-control/

Bump the version to 0.99.21.

Martin

> Thanks,
> Raymond Cavalcante
>
>> On Oct 15, 2016, at 08:21, Martin Morgan <martin.morgan at roswellpark.org> wrote:
>>
>>> On 10/15/2016 07:53 AM, Raymond Cavalcante wrote:
>>> Hello,
>>>
>>> My recently accepted package (thanks!) annotatr, has mismatching versions on the GitHub mirror (v0.99.20 https://github.com/Bioconductor-mirror/annotatr/blob/master/DESCRIPTION <https://github.com/Bioconductor-mirror/annotatr/blob/master/DESCRIPTION>) and Bioconductor/devel (v0.99.19 https://bioconductor.org/packages/devel/bioc/html/annotatr.html <https://bioconductor.org/packages/devel/bioc/html/annotatr.html>). I'm not sure what I could do from my end to help solve this, so I'm hoping someone can help me.
>>>
>>
>> the svn commit (r122398, mirrored to git) that changed version to 0.99.20 was after the most recent nightly builds started
>>
>>  http://bioconductor.org/checkResults/3.4/bioc-LATEST/
>>
>> (note the  'Last Changed Revi: 122395) The version available via the web site will sync on next successful build, likely today late afternoon Eastern.
>>
>> Martin
>>
>>
>>> Thanks,
>>> Raymond Cavalcante
>>>    [[alternative HTML version deleted]]
>>>
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>>
>>
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