[Bioc-devel] flowCore fails with GCC 4.4.7 on RHEL 6.0

[Kasper Daniel Hansen]

Latest version (1.39.11).

My guess is that this is a case of the author using C++ stuff which is not
support on 4.4.7.

** libs
/usr/bin/g++ -std=c++0x
-I/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/include
-DNDEBUG -I../inst/include/  -I/usr/local/include
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/Rcpp/include"
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/BH/include"
  -fpic  -g -O2 -march=amdfam10 -c FastLogicle.cpp -o FastLogicle.o
/usr/bin/g++ -std=c++0x
-I/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/include
-DNDEBUG -I../inst/include/  -I/usr/local/include
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/Rcpp/include"
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/BH/include"
  -fpic  -g -O2 -march=amdfam10 -c Hyperlog.cpp -o Hyperlog.o
/usr/bin/g++ -std=c++0x
-I/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/include
-DNDEBUG -I../inst/include/  -I/usr/local/include
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/Rcpp/include"
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/BH/include"
  -fpic  -g -O2 -march=amdfam10 -c Logicle.cpp -o Logicle.o
/usr/bin/g++ -std=c++0x
-I/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/include
-DNDEBUG -I../inst/include/  -I/usr/local/include
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/Rcpp/include"
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/BH/include"
  -fpic  -g -O2 -march=amdfam10 -c RcppExports.cpp -o RcppExports.o
/usr/bin/g++ -std=c++0x
-I/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/include
-DNDEBUG -I../inst/include/  -I/usr/local/include
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/Rcpp/include"
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/BH/include"
  -fpic  -g -O2 -march=amdfam10 -c biexponential.cpp -o biexponential.o
/usr/bin/g++ -std=c++0x
-I/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/include
-DNDEBUG -I../inst/include/  -I/usr/local/include
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/Rcpp/include"
-I"/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/BH/include"
  -fpic  -g -O2 -march=amdfam10 -c convertRawBytes.cpp -o convertRawBytes.o
convertRawBytes.cpp: In function ‘std::vector<double,
std::allocator<double> > convertRawBytes(BYTES, bool, std::vector<short
unsigned int, std::allocator<short unsigned int> >, short unsigned int,
bool)’:
convertRawBytes.cpp:48: error: expected initializer before ‘:’ token
convertRawBytes.cpp:53: error: expected primary-expression before ‘auto’
convertRawBytes.cpp:53: error: expected ‘)’ before ‘auto’
convertRawBytes.cpp:56: error: ‘nElement’ was not declared in this scope
convertRawBytes.cpp:61: error: ‘nrow’ was not declared in this scope
convertRawBytes.cpp:97: error: call of overloaded ‘to_string(short unsigned
int&)’ is ambiguous
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h:2604:
note: candidates are: std::string std::to_string(long long int)
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h:2610:
note:                 std::string std::to_string(long long unsigned int)
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h:2616:
note:                 std::string std::to_string(long double)
convertRawBytes.cpp:112: error: call of overloaded ‘to_string(short
unsigned int&)’ is ambiguous
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h:2604:
note: candidates are: std::string std::to_string(long long int)
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h:2610:
note:                 std::string std::to_string(long long unsigned int)
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h:2616:
note:                 std::string std::to_string(long double)
make: *** [convertRawBytes.o] Error 1
ERROR: compilation failed for package ‘flowCore’
* removing
‘/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/site-library/flowCore’

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