[Bioc-devel] tokay1 (windows) build server cannot use the nbconvertR vignette engine

[Hervé Pagès]

Hi Philipp,

On 10/04/2016 12:13 AM, Angerer, Philipp via Bioc-devel wrote:
> Hi,
>
> Looking at my package’s build report, the devel version isn’t built anymore on windows: http://bioconductor.org/checkResults/devel/bioc-LATEST/destiny/tokay1-buildsrc.html
>
> The release version is built just fine with moscato2: http://bioconductor.org/checkResults/release/bioc-LATEST/destiny/moscato2-buildsrc.html
>
> It would be really nice if this could be fixed. Usually running “jupyter nbconvert --help” successfully means that nbconvertR will work.

The error says:

   Either IPython 3+ or Jupyter has to be installed, but neither could
   be called.

But neither Jupyter or IPython 3+ is installed on tokay1 at the moment.
Which one should we install?

Note that packages with special requirements should list them in the
SystemRequirements field of the DESCRIPTION file. Also it would be great
if you could provide an INSTALL file in the top-level folder of the
package where you explain the installation process of these
requirements.

Thanks,
H.

>
> Best, Philipp
>
>
>
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-- 
Hervé Pagès

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